8DUN
Cryo-em structure of antibody skw11 in complex with western equine encephalitis virus spike (local refinement from vlp particles)
PDB DOI: 10.2210/pdb8dun/pdb
Classification: IMMUNE SYSTEM Organism(s): Anser Indicus , Saccharolobus Islandicus M.16.4
Deposited: 2022-07-27 Deposition Author(s): Cerutti, G. , Roederer, M. , Shapiro, L. , Verardi, R.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 5.84 Å
Cryo-em structure of antibody skw11 in complex with western equine encephalitis virus spike (local refinement from vlp particles)
Cerutti, G. , Roederer, M. , Shapiro, L. , Verardi, R.
Primary Citation of Related Structures: 8DUN
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Antibody SKW11 heavy chain | H | 231 | Anser Indicus , Saccharolobus Islandicus M.16.4 | QVQLQESGPGLVKPSETLSLTCAVSGDSISNNYWTWIRHFPGKGLEWIGRIYGDAGSTDYNPSLKSRVTISMDLSKNQFSLDLTSVTVADTALYYCASRTTVADNWFDVWGPGVLVTVSSASTKGPSVFPLAPSSRSTSESTAALGCLVKDYFPEPVTVSWNSGSLTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYVCNVNHKPSNTKVDKRVEIKTCGGLEVLFQ |
| Antibody SKW11 heavy chain | I | 231 | Anser Indicus , Saccharolobus Islandicus M.16.4 | QVQLQESGPGLVKPSETLSLTCAVSGDSISNNYWTWIRHFPGKGLEWIGRIYGDAGSTDYNPSLKSRVTISMDLSKNQFSLDLTSVTVADTALYYCASRTTVADNWFDVWGPGVLVTVSSASTKGPSVFPLAPSSRSTSESTAALGCLVKDYFPEPVTVSWNSGSLTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYVCNVNHKPSNTKVDKRVEIKTCGGLEVLFQ |
| Antibody SKW11 heavy chain | N | 231 | Anser Indicus , Saccharolobus Islandicus M.16.4 | QVQLQESGPGLVKPSETLSLTCAVSGDSISNNYWTWIRHFPGKGLEWIGRIYGDAGSTDYNPSLKSRVTISMDLSKNQFSLDLTSVTVADTALYYCASRTTVADNWFDVWGPGVLVTVSSASTKGPSVFPLAPSSRSTSESTAALGCLVKDYFPEPVTVSWNSGSLTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYVCNVNHKPSNTKVDKRVEIKTCGGLEVLFQ |
| Antibody SKW11 light chain | L | 214 | Anser Indicus , Saccharolobus Islandicus M.16.4 | DIQMTQSPSSLSASVGDTVTITCRATQSISSLLAWYQYKPGKAPKLLIYQASSLHIGVPSRFSGSGSGTDFTLTISSLQSEDFATYYCQQHDSRPWTFGQGTKVDIKRTVAAPSVFIFPPSEDQVKSGTVSVVCLLNNFYPREASVKWKVDGALKTGNSQESVTEQDSKDNTYSLSSTLTLSSTEYQSHKVYACEVTHQGLSSPVTKSFNRGEC |
| Antibody SKW11 light chain | M | 214 | Anser Indicus , Saccharolobus Islandicus M.16.4 | DIQMTQSPSSLSASVGDTVTITCRATQSISSLLAWYQYKPGKAPKLLIYQASSLHIGVPSRFSGSGSGTDFTLTISSLQSEDFATYYCQQHDSRPWTFGQGTKVDIKRTVAAPSVFIFPPSEDQVKSGTVSVVCLLNNFYPREASVKWKVDGALKTGNSQESVTEQDSKDNTYSLSSTLTLSSTEYQSHKVYACEVTHQGLSSPVTKSFNRGEC |
| Antibody SKW11 light chain | O | 214 | Anser Indicus , Saccharolobus Islandicus M.16.4 | DIQMTQSPSSLSASVGDTVTITCRATQSISSLLAWYQYKPGKAPKLLIYQASSLHIGVPSRFSGSGSGTDFTLTISSLQSEDFATYYCQQHDSRPWTFGQGTKVDIKRTVAAPSVFIFPPSEDQVKSGTVSVVCLLNNFYPREASVKWKVDGALKTGNSQESVTEQDSKDNTYSLSSTLTLSSTEYQSHKVYACEVTHQGLSSPVTKSFNRGEC |
| Spike glycoprotein E1 | A | 489 | Anser Indicus , Saccharolobus Islandicus M.16.4 | RPTNAETFGETLNHLWFNNQPFLWAQLCIPLAALVILFRCFSCCMPFLLVAGVCLGKVDAFEHATTVPNVPGIPYKALVERAGYAPLNLEITVVSSELTPSTNKEYVTCRFHTVIPSPQVKCCGSLECKASSKADYTCRVFGGVYPFMWGGAQCFCDSENTQLSEAYVEFAPDCTIDHAVALKVHTAALKVGLRIVYGNTTAHLDTFVNGVTPGSSRDLKVIAGPISAAFSPFDHKVVIRKGLVYNYDFPEYGAMKPGAFGDIQASSLDATDIVARTDIRLLKPSVKNIHVPYTQAVSGYEMWKNNSGRPLQETAPFGCKIEVEPLRASNCAYGHIPISIDIPDAAFVRSSESPTILEVSCTVADCIYSADFGGSLTLQYKADREGHCPVHSHSTTAVLKEATTHVTAVGSITLHFSTSSPQANFIVSLCGKKTTCNAECKPPADHIIGEPHKVDQEFQAAVSKTSWNWLLALFGGASSLIVVGLIVLV |
| Spike glycoprotein E1 | F | 489 | Anser Indicus , Saccharolobus Islandicus M.16.4 | RPTNAETFGETLNHLWFNNQPFLWAQLCIPLAALVILFRCFSCCMPFLLVAGVCLGKVDAFEHATTVPNVPGIPYKALVERAGYAPLNLEITVVSSELTPSTNKEYVTCRFHTVIPSPQVKCCGSLECKASSKADYTCRVFGGVYPFMWGGAQCFCDSENTQLSEAYVEFAPDCTIDHAVALKVHTAALKVGLRIVYGNTTAHLDTFVNGVTPGSSRDLKVIAGPISAAFSPFDHKVVIRKGLVYNYDFPEYGAMKPGAFGDIQASSLDATDIVARTDIRLLKPSVKNIHVPYTQAVSGYEMWKNNSGRPLQETAPFGCKIEVEPLRASNCAYGHIPISIDIPDAAFVRSSESPTILEVSCTVADCIYSADFGGSLTLQYKADREGHCPVHSHSTTAVLKEATTHVTAVGSITLHFSTSSPQANFIVSLCGKKTTCNAECKPPADHIIGEPHKVDQEFQAAVSKTSWNWLLALFGGASSLIVVGLIVLV |
| Spike glycoprotein E1 | J | 489 | Anser Indicus , Saccharolobus Islandicus M.16.4 | RPTNAETFGETLNHLWFNNQPFLWAQLCIPLAALVILFRCFSCCMPFLLVAGVCLGKVDAFEHATTVPNVPGIPYKALVERAGYAPLNLEITVVSSELTPSTNKEYVTCRFHTVIPSPQVKCCGSLECKASSKADYTCRVFGGVYPFMWGGAQCFCDSENTQLSEAYVEFAPDCTIDHAVALKVHTAALKVGLRIVYGNTTAHLDTFVNGVTPGSSRDLKVIAGPISAAFSPFDHKVVIRKGLVYNYDFPEYGAMKPGAFGDIQASSLDATDIVARTDIRLLKPSVKNIHVPYTQAVSGYEMWKNNSGRPLQETAPFGCKIEVEPLRASNCAYGHIPISIDIPDAAFVRSSESPTILEVSCTVADCIYSADFGGSLTLQYKADREGHCPVHSHSTTAVLKEATTHVTAVGSITLHFSTSSPQANFIVSLCGKKTTCNAECKPPADHIIGEPHKVDQEFQAAVSKTSWNWLLALFGGASSLIVVGLIVLV |
| Spike glycoprotein E2 | B | 408 | Anser Indicus , Saccharolobus Islandicus M.16.4 | PYLGFCPYCRHSAPCFSPIKIENVWDESDDGSIRIQVSAQFGYNQAGTADVTKFRYMSFDHDHDIKEDSMDKIAISTSGPCRRLGHKGYFLLAQCPPGDSVTVSITSGASENSCTVEKKIRRKFVGREEYLFPPVHGKLVKCHVYDHLKETSAGYITMHRPGPHAYKSYLEEASGEVYIKPPSGKNVTYECKCGDYSTGIVSTRTKMNGCTKAKQCIAYKSDQTKWVFNSPDLIRHTDHSVQGKLHIPFRLTPTVCPVPLAHTPTVTKWFKGITLHLTATRPTLLTTRKLGLRADATAEWITGTTSRNFSVGREGLEYVWGNHEPVRVWAQESAPGDPHGWPHEIIIHYYHRHPVYTVIVLCGVALAILVGTASSAACIAKARRDCLTPYALAPNATVPTALAVLCCI |
| Spike glycoprotein E2 | G | 408 | Anser Indicus , Saccharolobus Islandicus M.16.4 | PYLGFCPYCRHSAPCFSPIKIENVWDESDDGSIRIQVSAQFGYNQAGTADVTKFRYMSFDHDHDIKEDSMDKIAISTSGPCRRLGHKGYFLLAQCPPGDSVTVSITSGASENSCTVEKKIRRKFVGREEYLFPPVHGKLVKCHVYDHLKETSAGYITMHRPGPHAYKSYLEEASGEVYIKPPSGKNVTYECKCGDYSTGIVSTRTKMNGCTKAKQCIAYKSDQTKWVFNSPDLIRHTDHSVQGKLHIPFRLTPTVCPVPLAHTPTVTKWFKGITLHLTATRPTLLTTRKLGLRADATAEWITGTTSRNFSVGREGLEYVWGNHEPVRVWAQESAPGDPHGWPHEIIIHYYHRHPVYTVIVLCGVALAILVGTASSAACIAKARRDCLTPYALAPNATVPTALAVLCCI |
| Spike glycoprotein E2 | K | 408 | Anser Indicus , Saccharolobus Islandicus M.16.4 | PYLGFCPYCRHSAPCFSPIKIENVWDESDDGSIRIQVSAQFGYNQAGTADVTKFRYMSFDHDHDIKEDSMDKIAISTSGPCRRLGHKGYFLLAQCPPGDSVTVSITSGASENSCTVEKKIRRKFVGREEYLFPPVHGKLVKCHVYDHLKETSAGYITMHRPGPHAYKSYLEEASGEVYIKPPSGKNVTYECKCGDYSTGIVSTRTKMNGCTKAKQCIAYKSDQTKWVFNSPDLIRHTDHSVQGKLHIPFRLTPTVCPVPLAHTPTVTKWFKGITLHLTATRPTLLTTRKLGLRADATAEWITGTTSRNFSVGREGLEYVWGNHEPVRVWAQESAPGDPHGWPHEIIIHYYHRHPVYTVIVLCGVALAILVGTASSAACIAKARRDCLTPYALAPNATVPTALAVLCCI |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2022-07-27 Deposition Author(s): Cerutti, G. , Roederer, M. , Shapiro, L. , Verardi, R.