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8DPM

Structure of ebov gp lacking the mucin-like domain with 9.20.1a2 fab and 6d6 scfv bound

PDB DOI: 10.2210/pdb8dpm/pdb

Classification: VIRAL PROTEIN/Immune System
Organism(s): Ebola Virus - Mayinga, Zaire, 1976 , Homo Sapiens , Mus Musculus

Deposited: 2022-07-15
Deposition Author(s): Saphire, E.O. , Yu, X.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.0 Å

8dpm
Literature

Structure of ebov gp lacking the mucin-like domain with 9.20.1a2 fab and 6d6 scfv bound

Saphire, E.O. , Yu, X.

Primary Citation of Related Structures: 8DPM


Proteins
Molecule Chains Sequence Length Organism Sequence
Glycoprotein GP1 F 280 Ebola Virus - Mayinga, Zaire, 1976 , Homo Sapiens , Mus Musculus IPLGVIHNSTLQVSDVDKLVCRDKLSSTNQLRSVGLNLEGNGVATDVPSATKRWGFRSGVPPKVVNYEAGEWAENCYNLEIKKPDGSECLPAAPDGIRGFPRCRYVHKVSGTGPCAGDFAFHKEGAFFLYDRLASTVIYRGTTFAEGVVAFLILPQAKKDFFSSHPLREPVNATEDPSSGYYSTTIRYQATGFGTNETEYLFEVDNLTYVQLESRFTPQFLLQLNETIYTSGKRSNTTGKLIWKVNPEIDTTIGEWAFWETKKNLTRKIRSEELSFTVVS
Glycoprotein GP1 A 280 Ebola Virus - Mayinga, Zaire, 1976 , Homo Sapiens , Mus Musculus IPLGVIHNSTLQVSDVDKLVCRDKLSSTNQLRSVGLNLEGNGVATDVPSATKRWGFRSGVPPKVVNYEAGEWAENCYNLEIKKPDGSECLPAAPDGIRGFPRCRYVHKVSGTGPCAGDFAFHKEGAFFLYDRLASTVIYRGTTFAEGVVAFLILPQAKKDFFSSHPLREPVNATEDPSSGYYSTTIRYQATGFGTNETEYLFEVDNLTYVQLESRFTPQFLLQLNETIYTSGKRSNTTGKLIWKVNPEIDTTIGEWAFWETKKNLTRKIRSEELSFTVVS
Glycoprotein GP1 K 280 Ebola Virus - Mayinga, Zaire, 1976 , Homo Sapiens , Mus Musculus IPLGVIHNSTLQVSDVDKLVCRDKLSSTNQLRSVGLNLEGNGVATDVPSATKRWGFRSGVPPKVVNYEAGEWAENCYNLEIKKPDGSECLPAAPDGIRGFPRCRYVHKVSGTGPCAGDFAFHKEGAFFLYDRLASTVIYRGTTFAEGVVAFLILPQAKKDFFSSHPLREPVNATEDPSSGYYSTTIRYQATGFGTNETEYLFEVDNLTYVQLESRFTPQFLLQLNETIYTSGKRSNTTGKLIWKVNPEIDTTIGEWAFWETKKNLTRKIRSEELSFTVVS
Glycoprotein GP2 G 136 Ebola Virus - Mayinga, Zaire, 1976 , Homo Sapiens , Mus Musculus EAIVNAQPKCNPNLHYWTTQDEGAAIGLAWIPYFGPAAEGIYTEGLMHNQDGLICGLRQLANETTQALQLFLRATTELRTFSILNRKAIDFLLQRWGGTCHILGPDCCIEPHDWTKNITDKIDQIIHDFVDKTLPD
Glycoprotein GP2 B 136 Ebola Virus - Mayinga, Zaire, 1976 , Homo Sapiens , Mus Musculus EAIVNAQPKCNPNLHYWTTQDEGAAIGLAWIPYFGPAAEGIYTEGLMHNQDGLICGLRQLANETTQALQLFLRATTELRTFSILNRKAIDFLLQRWGGTCHILGPDCCIEPHDWTKNITDKIDQIIHDFVDKTLPD
Glycoprotein GP2 L 136 Ebola Virus - Mayinga, Zaire, 1976 , Homo Sapiens , Mus Musculus EAIVNAQPKCNPNLHYWTTQDEGAAIGLAWIPYFGPAAEGIYTEGLMHNQDGLICGLRQLANETTQALQLFLRATTELRTFSILNRKAIDFLLQRWGGTCHILGPDCCIEPHDWTKNITDKIDQIIHDFVDKTLPD
Antibody 6D6 scFv H 243 Ebola Virus - Mayinga, Zaire, 1976 , Homo Sapiens , Mus Musculus QVQLQQSGTELVKPGASVKLSCKASGYTFTSYWMHWVKQRPGQGLEWIGEINPRNGRTDFSEKFKSKATLTVDTSSSTAFIQLSSLTSEDSAVYYCARWGYYGSSDYWGQGTALTVSSGTGGSGGGGSGGGGSGGGASDIVVTQSHKFMSTSVGDRVSITCKASQDVSVAVAWYQQKTGQSPKLLIYSASYRITGVPDRFTGSGSGTDFTFTISSVQAEDMAVYYCQQHYSTPPWTFGGGTKL
Antibody 6D6 scFv C 243 Ebola Virus - Mayinga, Zaire, 1976 , Homo Sapiens , Mus Musculus QVQLQQSGTELVKPGASVKLSCKASGYTFTSYWMHWVKQRPGQGLEWIGEINPRNGRTDFSEKFKSKATLTVDTSSSTAFIQLSSLTSEDSAVYYCARWGYYGSSDYWGQGTALTVSSGTGGSGGGGSGGGGSGGGASDIVVTQSHKFMSTSVGDRVSITCKASQDVSVAVAWYQQKTGQSPKLLIYSASYRITGVPDRFTGSGSGTDFTFTISSVQAEDMAVYYCQQHYSTPPWTFGGGTKL
Antibody 6D6 scFv M 243 Ebola Virus - Mayinga, Zaire, 1976 , Homo Sapiens , Mus Musculus QVQLQQSGTELVKPGASVKLSCKASGYTFTSYWMHWVKQRPGQGLEWIGEINPRNGRTDFSEKFKSKATLTVDTSSSTAFIQLSSLTSEDSAVYYCARWGYYGSSDYWGQGTALTVSSGTGGSGGGGSGGGGSGGGASDIVVTQSHKFMSTSVGDRVSITCKASQDVSVAVAWYQQKTGQSPKLLIYSASYRITGVPDRFTGSGSGTDFTFTISSVQAEDMAVYYCQQHYSTPPWTFGGGTKL
Antibody 9.20.1A2 Fab heavy chain I 122 Ebola Virus - Mayinga, Zaire, 1976 , Homo Sapiens , Mus Musculus EVQLVESGGDLVQPGGSLRLSCAASGITLSGVWMNWVRQAPGKGLEWIGRIKSTSDGGRADFAAPARGRFTMSRDESKNKLFLQMNNLGIEDTGMYYCFTRVQRDGTKDDFWGRGTLVTVSS
Antibody 9.20.1A2 Fab heavy chain D 122 Ebola Virus - Mayinga, Zaire, 1976 , Homo Sapiens , Mus Musculus EVQLVESGGDLVQPGGSLRLSCAASGITLSGVWMNWVRQAPGKGLEWIGRIKSTSDGGRADFAAPARGRFTMSRDESKNKLFLQMNNLGIEDTGMYYCFTRVQRDGTKDDFWGRGTLVTVSS
Antibody 9.20.1A2 Fab heavy chain N 122 Ebola Virus - Mayinga, Zaire, 1976 , Homo Sapiens , Mus Musculus EVQLVESGGDLVQPGGSLRLSCAASGITLSGVWMNWVRQAPGKGLEWIGRIKSTSDGGRADFAAPARGRFTMSRDESKNKLFLQMNNLGIEDTGMYYCFTRVQRDGTKDDFWGRGTLVTVSS
Antibody 9.20.1A2 Fab light chain J 112 Ebola Virus - Mayinga, Zaire, 1976 , Homo Sapiens , Mus Musculus QSVLTQPPSVSGAPGQTVTISCTGSYSNIGAGYDVQWYQHLPGTAPKLLIYDNVHRPSGVPDRFSGSKSGTSASLAITGLQTEDEADYYCQSYDSRLRDQWVFGGGTKLTVL
Antibody 9.20.1A2 Fab light chain E 112 Ebola Virus - Mayinga, Zaire, 1976 , Homo Sapiens , Mus Musculus QSVLTQPPSVSGAPGQTVTISCTGSYSNIGAGYDVQWYQHLPGTAPKLLIYDNVHRPSGVPDRFSGSKSGTSASLAITGLQTEDEADYYCQSYDSRLRDQWVFGGGTKLTVL
Antibody 9.20.1A2 Fab light chain O 112 Ebola Virus - Mayinga, Zaire, 1976 , Homo Sapiens , Mus Musculus QSVLTQPPSVSGAPGQTVTISCTGSYSNIGAGYDVQWYQHLPGTAPKLLIYDNVHRPSGVPDRFSGSKSGTSASLAITGLQTEDEADYYCQSYDSRLRDQWVFGGGTKLTVL
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2022-07-15
Deposition Author(s): Saphire, E.O. , Yu, X.