8DMB
Structure of desulfovirgula thermocuniculi isrb (dtisrb) in complex with omega rna and target dna
PDB DOI: 10.2210/pdb8dmb/pdb
Classification: RNA BINDING PROTEIN/RNA/DNA Organism(s): Limulus Polyphemus , Bauhinia Forficata , Fremyella Diplosiphon , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.)
Deposited: 2022-07-08 Deposition Author(s): Kappel, K. , Seiichi, H. , Zhang, F.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 3.1 Å
Structure of desulfovirgula thermocuniculi isrb (dtisrb) in complex with omega rna and target dna
Kappel, K. , Seiichi, H. , Zhang, F.
Primary Citation of Related Structures: 8DMB
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Ubiquitin-like protein SMT3,IsrB protein,monomeric superfolder Green Fluorescent Protein | P | 741 | Limulus Polyphemus , Bauhinia Forficata , Fremyella Diplosiphon , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) | MGSSHHHHHHSSGLVPRGSHMASWSHPQFEKGGGSGGGSGGSAWSHPQFEKMSDSEVNQEAKPEVKPEVKPETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGSMSTSITRVPVVGVDGRPLMPTTPRKARLLIRDGLAVPRRNKLGLFYIQMLRPVGTRTQPVALAVDPGAKYDGVAVASHRRVELRAMVFLPDDVPRKMETRRNLRRARRYRKTPRRPARFDNRRRKGYWLAPTQRFKVEARLKVVRELCRIYPVQLIVTEDVRFNHARDRNGKYFSTVEIGKTLTYREYRKLAELRLVEVSETDAWRERFGLEKRTERKCEQVPETHANDAAAMLMGVTGCAHNPAAPFFVWRRLRYARRSLFRQNPQKDGVRPRFGGTANGGFFRKGDWVEAEKAGKVYRGWVCGLPTETTKLVGVADADGKRIGQFSPKKVRLLARSTGFSWKEVAAHSSPEVSKGEELFTGVVPILVELDGDVNGHKFSVRGEGEGDATNGKLTLKFICTTGKLPVPWPTLVTTLTYGVQCFSRYPDHMKQHDFFKSAMPEGYVQERTISFKDDGTYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNFNSHNVYITADKQKNGIKANFKIRHNVEDGSVQLADHYQQNTPIGDGPVLLPDNHYLSTQSKLSKDPNEKRDHMVLLEFVTAAGITLGMDELYK |
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| omega RNA | w | 284 | NA | GGGCCUUAUUAAAUGACUUCUCGUCAACCACCCCUGACUGAAGUCAGAGGCUUGCUUCUGGCCUGAGUUGGGGGCCCGGUUUGGCGGGGCCGGGGGCAACUGGCUGACCAGGCGGCCCGGUUCGCCGGGCAGGGGUCCGCGGGGCUACCAAGGACUUCCGGGUGUUUCGCCAGCCCGGACUAUCUCCGGCAGAACCGCUCAAUGCCGCGGCCGGCCAAGACCGGCCUAAGCCCUGCGGACAGCGCCGAGGCGACAAUCACUCCGAAAGGAGGCCGUGUAUCGGC |
| target DNA | x | 31 | NA | GATCAGCTCAAGAGAAGTCATTTAATAAGGC |
| non-target DNA | y | 10 | NA | TTGAGCTGAT |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2022-07-08 Deposition Author(s): Kappel, K. , Seiichi, H. , Zhang, F.