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8DMB

Structure of desulfovirgula thermocuniculi isrb (dtisrb) in complex with omega rna and target dna

PDB DOI: 10.2210/pdb8dmb/pdb

Classification: RNA BINDING PROTEIN/RNA/DNA
Organism(s): Desulfovirgula Thermocuniculi , Saccharomyces Cerevisiae S288C , Synthetic Construct , Synthetic Construct

Deposited: 2022-07-08
Deposition Author(s): Kappel, K. , Seiichi, H. , Zhang, F.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.1 Å

8dmb
Literature

Structure of desulfovirgula thermocuniculi isrb (dtisrb) in complex with omega rna and target dna

Kappel, K. , Seiichi, H. , Zhang, F.

Primary Citation of Related Structures: 8DMB


Proteins
Molecule Chains Sequence Length Organism Sequence
Ubiquitin-like protein SMT3,IsrB protein,monomeric superfolder Green Fluorescent Protein P 741 Desulfovirgula Thermocuniculi , Saccharomyces Cerevisiae S288C , Synthetic Construct , Synthetic Construct MGSSHHHHHHSSGLVPRGSHMASWSHPQFEKGGGSGGGSGGSAWSHPQFEKMSDSEVNQEAKPEVKPEVKPETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGSMSTSITRVPVVGVDGRPLMPTTPRKARLLIRDGLAVPRRNKLGLFYIQMLRPVGTRTQPVALAVDPGAKYDGVAVASHRRVELRAMVFLPDDVPRKMETRRNLRRARRYRKTPRRPARFDNRRRKGYWLAPTQRFKVEARLKVVRELCRIYPVQLIVTEDVRFNHARDRNGKYFSTVEIGKTLTYREYRKLAELRLVEVSETDAWRERFGLEKRTERKCEQVPETHANDAAAMLMGVTGCAHNPAAPFFVWRRLRYARRSLFRQNPQKDGVRPRFGGTANGGFFRKGDWVEAEKAGKVYRGWVCGLPTETTKLVGVADADGKRIGQFSPKKVRLLARSTGFSWKEVAAHSSPEVSKGEELFTGVVPILVELDGDVNGHKFSVRGEGEGDATNGKLTLKFICTTGKLPVPWPTLVTTLTYGVQCFSRYPDHMKQHDFFKSAMPEGYVQERTISFKDDGTYKTRAEVKFEGDTLVNRIELKGIDFKEDGNILGHKLEYNFNSHNVYITADKQKNGIKANFKIRHNVEDGSVQLADHYQQNTPIGDGPVLLPDNHYLSTQSKLSKDPNEKRDHMVLLEFVTAAGITLGMDELYK

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
omega RNA w 284 NA GGGCCUUAUUAAAUGACUUCUCGUCAACCACCCCUGACUGAAGUCAGAGGCUUGCUUCUGGCCUGAGUUGGGGGCCCGGUUUGGCGGGGCCGGGGGCAACUGGCUGACCAGGCGGCCCGGUUCGCCGGGCAGGGGUCCGCGGGGCUACCAAGGACUUCCGGGUGUUUCGCCAGCCCGGACUAUCUCCGGCAGAACCGCUCAAUGCCGCGGCCGGCCAAGACCGGCCUAAGCCCUGCGGACAGCGCCGAGGCGACAAUCACUCCGAAAGGAGGCCGUGUAUCGGC
target DNA x 31 NA GATCAGCTCAAGAGAAGTCATTTAATAAGGC
non-target DNA y 10 NA TTGAGCTGAT
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2022-07-08
Deposition Author(s): Kappel, K. , Seiichi, H. , Zhang, F.