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FASTA Sequence PDB Format mmCIF Format
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8DM2

Cryo-em structure of sars-cov-2 omicron ba.2 spike protein (focused refinement of ntd)

PDB DOI: 10.2210/pdb8dm2/pdb

Classification: VIRAL PROTEIN
Organism(s): Severe Acute Respiratory Syndrome Coronavirus 2

Deposited: 2022-07-08
Deposition Author(s): Berezuk, A.M. , Cholak, S. , Mannar, D. , Saville, J.W. , Subramaniam, S. , Tuttle, K.S. , Vahdatihassani, F. , Zhu, X.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.91 Å

8dm2
Literature

Cryo-em structure of sars-cov-2 omicron ba.2 spike protein (focused refinement of ntd)

Berezuk, A.M. , Cholak, S. , Mannar, D. , Saville, J.W. , Subramaniam, S. , Tuttle, K.S. , Vahdatihassani, F. , Zhu, X.

Primary Citation of Related Structures: 8DM2


Proteins
Molecule Chains Sequence Length Organism Sequence
Spike glycoprotein A 1285 Severe Acute Respiratory Syndrome Coronavirus 2 MFVFLVLLPLVSSQCVNLITRTQSYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLDVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLGRDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESIVRFPNITNLCPFDEVFNATRFASVYAWNRKRISNCVADYSVLYNFAPFFAFKCYGVSPTKLNDLCFTNVYADSFVIRGNEVSQIAPGQTGNIADYNYKLPDDFTGCVIAWNSNKLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGNKPCNGVAGFNCYFPLRSYGFRPTYGVGHQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQGVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEYVNNSYECDIPIGAGICASYQTQTKSHGSASSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLKRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKYFGGFNFSQILPDPSKPSKRSPIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGPALQIPFPMQMAYRFNGIGVTQNVLYENQKLIANQFNSAIGKIQDSLSSTPSALGKLQDVVNHNAQALNTLVKQLSSKFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDSFKEELDKYFKNHTSPDVDLGDISGINASVVNIQKEIDRLNEVAKNLNESLIDLQELGKYEQGSGYIPEAPRDGQAYVRKDGEWVLLSTFLGRSLEVLFQGPGHHHHHHHHSAWSHPQFEKGGGSGGGGSGGSAWSHPQFEK
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2022-07-08
Deposition Author(s): Berezuk, A.M. , Cholak, S. , Mannar, D. , Saville, J.W. , Subramaniam, S. , Tuttle, K.S. , Vahdatihassani, F. , Zhu, X.