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FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

8DKC

P. gingivalis rna polymerase

PDB DOI: 10.2210/pdb8dkc/pdb

Classification: TRANSCRIPTION
Organism(s): Porphyromonas Gingivalis

Deposited: 2022-07-05
Deposition Author(s): Bu, F. , Liu, B.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.5 Å

8dkc
Literature

P. gingivalis rna polymerase

Bu, F. , Liu, B.

Primary Citation of Related Structures: 8DKC


Proteins
Molecule Chains Sequence Length Organism Sequence
DNA-directed RNA polymerase subunit alpha A 330 Porphyromonas Gingivalis MAILAFQKPENVLMMETSDSIAKFEFKPLEPGYGITIGNALRRILLSSLEGFAITAIKIEGVEHEFATIPGVLEDVTNIILNLKQVRFKQIVPNADVEKATIVISNSEVFRAGDLNAQLSNFEVLNSNLVICHLDKSATLTMEFSINKGRGYVSAEENRAEHNELSTIAIDSIYTPIRNVKYAVENFRVEQKTDYEKLLMEVTTDGSIRPVDALREAAQILISHFSLFAENKIAIEYVDIVDTDEFDEDSLHMRQLLKSKLSGLDLSVRALNCLNAAGVDTLGDLVSLSRSDLMKIRNFGKKSLTELDELLATLNLSFGMDISKYKLDKD
DNA-directed RNA polymerase subunit alpha B 330 Porphyromonas Gingivalis MAILAFQKPENVLMMETSDSIAKFEFKPLEPGYGITIGNALRRILLSSLEGFAITAIKIEGVEHEFATIPGVLEDVTNIILNLKQVRFKQIVPNADVEKATIVISNSEVFRAGDLNAQLSNFEVLNSNLVICHLDKSATLTMEFSINKGRGYVSAEENRAEHNELSTIAIDSIYTPIRNVKYAVENFRVEQKTDYEKLLMEVTTDGSIRPVDALREAAQILISHFSLFAENKIAIEYVDIVDTDEFDEDSLHMRQLLKSKLSGLDLSVRALNCLNAAGVDTLGDLVSLSRSDLMKIRNFGKKSLTELDELLATLNLSFGMDISKYKLDKD
DNA-directed RNA polymerase subunit beta C 1269 Porphyromonas Gingivalis MTPTTNNKRINFASIKNPLFYPDFLEVQLKSFHDFLQLDTPPERRKKEGLYKVFAENFPITDTRNNFVLEFLDYYIDPPKYSIEECLSRGLTYSVPLKAKLKLYCTDPDHEDFATVIQDVFLGPIPYMTSSGTFVINGAERVIVSQLHRSPGVFFGQSLHTNGTKLYSARIIPFKGSWIEFATDINNVMYAYIDRKKKLPVTTLLRAIGFEADKDILDIFNLADEVKVTKANLKKCIGRKLAARVINTYIDDLSDEDTGEVVSMERITVVVDREVELTEDNIEAILNSNAQTILLHRNDSNTSDYSIIFNTLQKDPCNSEKEALYYVYRQLRNAEPADDASAREVITNLFFSDKRYDLGDVGRYRINKKLNLNIDPDIKVLTNEDIIEIIKYLIELVNSKASVDDIDHLSNRRVRTVGEQLYNQFGIGLARMARTVRDRMNVRDNEVFTPIDLVNAKTISSVVNSFFGTNALSQFMDQTNPLAEITHKRRLSALGPGGLSRERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLCVYAKISDLGFITTPYREVKNGKVDFSDNGLKYYTAEEEEEKTVAQGNAPLDENGRFVRERVKARYESDFPLVTPDEVDLMDVSPTQIASIAAALIPFLEHDDANRALMGSNMMRQAVPLLRPESPIVGTGIEGKLVKDSRTQIVAERGGEVVFVDASCIKIRYDRTADEEFVSFDDAIVTYYLPKYRKTNQSTTIDLHPICSKGDRVEAGQILTEGYSTQGGELALGRNVQVAYMPWKGYNYEDAIVLNERMVREDFFTSVHVDEYILEVRETKRGLEELTSDIPNVSEDATRDLDENGIVRIGAHIEPGDILIGKITPKGESDPTPEEKLLRAIFGDKAGDVKDASLKATPSLRGVVIDTKLFSKAAKKKSRTSTKEAVSKLDETYAKRQQQLHERLIEKLTELTKGKTCCGVKDYLNVELIKAGSKFTKKDLEALDFNVIQLSDWTNDAHTNELIKAVAVNYLKHSKEIEAELRRRKLDETIGDELPAGIVQMAKVYIAKKRKIQVGDKMAGRHGNKGIVSKIVRQEDMPFLADGTPVDICLNPLGVPSRMNLGQIFEAVLAWAGRKMNVKFATPIFDGASLNDMNEWTDKAGLPRDGKTYLYDGGTGERFDQPATVGVTYFLKLGHMVDDKMHARSIGPYSLITQQPLGGKAQFGGQRFGEMEVWALEAFGASHILQEILTVKSDDVVGRSKAYEAIVKGDPMPTPGIPESLNVLLHELKGLGLSFSLD
DNA-directed RNA polymerase subunit beta' D 1439 Porphyromonas Gingivalis MAFRKENKIKNNFSKIRITLASPEEILENSFGEVLKPETINYRTYKPERDGLFCERIFGPVKDFECHCGKYKRIRYRGIVCDRCGVEVTEKKVRRERMGHIHLVVPVAHIWYFRSLPNKIGYLLGLPTKKLDAIIYYERYVVIQPGVAEGLSQLDLLSEEEYLDKLDEIERTHKGNQNLEDTNPDKFIAKIGAEAIYDLLCRVDLDSISYELRDRANTDGSQQRKTEALKRLQVVESFRASKGVNRPEWMVMKVIPVIPPDLRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLIEIKAPEVILRNEKRMLQEAVDSLFDNSRKSSAVKSDNNRPLKSLSDSLKGKQGRFRQNLLGKRVDYSARSVIVVGPELKMHECGLPKDMAAELYKPFIIRKLIERGIVKTVKSAKKIVDRKEPVIWDILEYVMKGHPVLLNRAPTLHRLGIQAFQPKLIEGKAIQLHPLSCTAFNADFDGDQMAVHLPLSNEAILEAQLLMLASHNILNPANGAPITVPSQDMVLGLYYITKLRPNTKGHGLIFYGPEEATIAYNEGKVDIHAPIKVYVEDYENGELVRRMVETSVGRLMVNEYVPKKVGYVNEVLGKKALRDIIGSVIKICGVATTAKFLDDIKNLGYYMAFKGGLSFNLADVLIPDEKDQLIQEGYTAVEQIMQDYSMGFITFNERYNQIIDTWTHINGRLSNVLIKQLSSDNDGFNSVFMMMDSGARGSKEQIRQLSGMRGLMAKPQKSGAEGGQIIENPILSNFKEGLSVLEYFISTHGARKGLADTALKTADAGYLTRRLVDVSHDVIITEEDCGTLRGLLTTELKQNEDVVASLYERILGRVSVHDIIHPTTGDIIVRAGEEIREQAAQIIEDSPIEAVEIRSVLTCESKKGVCAKCYGRNLATNRMVQRGEVVGVIAAQSIGEPGTQLTLRTFHVGGIASNVATENSLLSKYDGILEFEELRAVDATDESHQVVVSRMTELRIADPNTGIILANHNIPYGAKLFFRQGDAVKKGDKIIEWDPFNAVIVSEVAGTLSFEGVVENVTFKMESDETTGLKEKIIIESKDKTMAPYARIIDENGEMLKNYSLPMGAHVVKDDGDTVKVGEILVKIPRSVGKAGDITGGLPRVTELFEARNPSNPAIVSEIDGEIGFGKLKRGNREITVTSKLGEEKKYLIPLSKQLLVQENDFVRAGTPLSDGAITPADILAIKGPTAVQEYIVNEVQDVYRLQGVKINDKHFEVIVRQMMRKVEIVDPGDTLFLEQQVVDKFEVMEENDRIWGKKVVIDAGDSQVLKAGQIVTARKLRDENSMLKRKDLKIVKVRDAKSATASQILQGITRAALQTKSFMSAASFQETTKVLNEAAICGKTDYLEGLKENVICGHLIPAGTGLRDYEKLVVMHRDDYEKATAERKSFLSEPTAEPAMEEAPSEHHHHHH
RNA polymerase Rpb6 E 110 Porphyromonas Gingivalis MELKKMNVPMDTITRDMVRLSEDTENVYETVMIIAKRANQIGQQMKQDLEKKLQDFSSSNDNLEEVFENREQIEISRYYEHLPKPGLIATAEYEQDKLYHRMPGATSTND
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2022-07-05
Deposition Author(s): Bu, F. , Liu, B.