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FASTA Sequence PDB Format mmCIF Format
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8DK5

Structure of 187bp lin28b nucleosome with site 0 mutation

PDB DOI: 10.2210/pdb8dk5/pdb

Classification: TRANSCRIPTION/DNA
Organism(s): Homo Sapiens , Mus Musculus , Synthetic Construct

Deposited: 2022-07-02
Deposition Author(s): Bai, Y. , Guan, R. , Lian, T.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.71 Å

Literature

Structure of 187bp lin28b nucleosome with site 0 mutation

Bai, Y. , Guan, R. , Lian, T.

Primary Citation of Related Structures: 8DK5


Proteins
Molecule Chains Sequence Length Organism Sequence
Histone H3.1 A 136 Homo Sapiens , Mus Musculus , Synthetic Construct MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Histone H3.1 E 136 Homo Sapiens , Mus Musculus , Synthetic Construct MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Histone H4 B 103 Homo Sapiens , Mus Musculus , Synthetic Construct MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
Histone H4 F 103 Homo Sapiens , Mus Musculus , Synthetic Construct MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
Histone H2A type 2-C C 129 Homo Sapiens , Mus Musculus , Synthetic Construct MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTESHKAKSK
Histone H2A type 2-C G 129 Homo Sapiens , Mus Musculus , Synthetic Construct MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTESHKAKSK
Histone H2B type 2-E D 126 Homo Sapiens , Mus Musculus , Synthetic Construct MPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Histone H2B type 2-E H 126 Homo Sapiens , Mus Musculus , Synthetic Construct MPEPAKSAPAPKKGSKKAVTKAQKKDGKKRKRSRKESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK
Single-chain variable fragment K 265 Homo Sapiens , Mus Musculus , Synthetic Construct MKSSHHHHHHENLYFQSNAMEVQLQQSGPELVEPGTSVKMPCKASGYTFTSYTIQWVKQTPRQGLEWIGYIYPYNAGTKYNEKFKGKATLTSDKSSSTVYMELSSLTSEDSAVYYCARKSSRLRSTLDYWGQGTSVTVSSGGGGSGGGGSGGGGSMDIKMTQSPSSMHASLGERVTITCKASQDIRSYLSWYQQKPWKSPKTLIYYATSLADGVPSRFSGSGSGQDFSLTINNLESDDTATYYCLQHGESPYTFGSGTKLEIKRA
Single-chain variable fragment N 265 Homo Sapiens , Mus Musculus , Synthetic Construct MKSSHHHHHHENLYFQSNAMEVQLQQSGPELVEPGTSVKMPCKASGYTFTSYTIQWVKQTPRQGLEWIGYIYPYNAGTKYNEKFKGKATLTSDKSSSTVYMELSSLTSEDSAVYYCARKSSRLRSTLDYWGQGTSVTVSSGGGGSGGGGSGGGGSMDIKMTQSPSSMHASLGERVTITCKASQDIRSYLSWYQQKPWKSPKTLIYYATSLADGVPSRFSGSGSGQDFSLTINNLESDDTATYYCLQHGESPYTFGSGTKLEIKRA

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (187-MER) i 187 NA GCATAAGTTAAGTGGAGAGAAAGAATCCTCAGTGGTGAGTATTAACATGGAACTTACTCCAACAATACAGATGCTGAATAAATGTAGTCTAAGTGAAGGAAGAAGGAAAGGTGGGAGCTGCCATCACTCAGAATTGTCCAGCAGGGATTGTGCAAGCTTGTGAATAAAGACACATACTTCATGTAGT
DNA (187-MER) j 187 NA ACTACATGAAGTATGTGTCTTTATTCACAAGCTTGCACAATCCCTGCTGGACAATTCTGAGTGATGGCAGCTCCCACCTTTCCTTCTTCCTTCACTTAGACTACATTTATTCAGCATCTGTATTGTTGGAGTAAGTTCCATGTTAATACTCACCACTGAGGATTCTTTCTCTCCACTTAACTTATGC
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2022-07-02
Deposition Author(s): Bai, Y. , Guan, R. , Lian, T.