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FASTA Sequence PDB Format mmCIF Format
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8DK2

Cryoem structure of pseudomonas aeruginosa pa14 jetabc in an unclamped state trapped in atp dependent dimeric form

PDB DOI: 10.2210/pdb8dk2/pdb

Classification: DNA BINDING PROTEIN/DNA
Organism(s): Puccinia Graminis F. Sp. Tritici (Strain Crl 75-36-700-3 / Race Sccl) , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.)

Deposited: 2022-07-01
Deposition Author(s): Corbett, K. , Deep, A. , Ego, K. , Gao, Y. , Gu, Y. , Herzik, M. , Zhou, H.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 4.1 Å

8dk2
Literature

Cryoem structure of pseudomonas aeruginosa pa14 jetabc in an unclamped state trapped in atp dependent dimeric form

Corbett, K. , Deep, A. , Ego, K. , Gao, Y. , Gu, Y. , Herzik, M. , Zhou, H.

Primary Citation of Related Structures: 8DK2


Proteins
Molecule Chains Sequence Length Organism Sequence
JetA A 517 Puccinia Graminis F. Sp. Tritici (Strain Crl 75-36-700-3 / Race Sccl) , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) MKSSHHHHHHENLYFQSNAEESAQQRSERYVSARSQHPAWLLLASRRAPLVLGCLRTLFERAHDGIPMEDALQALSEMLAAYASQELYEIDPDATHLQAGRELREWIKRRLVVEREGRIYATDALESAIQFVDSLDSRIMTSTASRLSVVQREIENLETGLNPSPTGRIASLRRRIQDLEHELARVEAGHVDVLDEAQAIEGMREVYNLATSLRADFRRVEDSWREADRALRHSIISEQSHRGEIVDRLLDGQDALLNTPEGRVFESFQQQLRQSAELEVMRERLRTILRHPAVPKALNRPQQRELRWLALRLVRESQAVLQARARSERDVRGFMKTGLAAEHHRVGQLLNDFFNLALSVDWQRQSERRKPACLPPVGVAITGVPAIERLRFKTLDDDDAGELDLSLKPAGLEQIDDDFWDAFDGLDREALIHDTLAVLVEQGRPVSLGELASLLPPAHDLETFALWLAMAREAGIEVLTEERQFVELVDEDEQRWGFNLPYVGLDHEALKDIDWEL
JetA B 517 Puccinia Graminis F. Sp. Tritici (Strain Crl 75-36-700-3 / Race Sccl) , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) MKSSHHHHHHENLYFQSNAEESAQQRSERYVSARSQHPAWLLLASRRAPLVLGCLRTLFERAHDGIPMEDALQALSEMLAAYASQELYEIDPDATHLQAGRELREWIKRRLVVEREGRIYATDALESAIQFVDSLDSRIMTSTASRLSVVQREIENLETGLNPSPTGRIASLRRRIQDLEHELARVEAGHVDVLDEAQAIEGMREVYNLATSLRADFRRVEDSWREADRALRHSIISEQSHRGEIVDRLLDGQDALLNTPEGRVFESFQQQLRQSAELEVMRERLRTILRHPAVPKALNRPQQRELRWLALRLVRESQAVLQARARSERDVRGFMKTGLAAEHHRVGQLLNDFFNLALSVDWQRQSERRKPACLPPVGVAITGVPAIERLRFKTLDDDDAGELDLSLKPAGLEQIDDDFWDAFDGLDREALIHDTLAVLVEQGRPVSLGELASLLPPAHDLETFALWLAMAREAGIEVLTEERQFVELVDEDEQRWGFNLPYVGLDHEALKDIDWEL
JetC C 1119 Puccinia Graminis F. Sp. Tritici (Strain Crl 75-36-700-3 / Race Sccl) , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) MKSSHHHHHHENLYFQSNAKQALLWRDSETFILTSIELYNWGGFQGYHRAEIDPSGTAVIGPTGSGKTTLVDALMTLLCANPRYNLASTGGHESDRDLVSYVRGVTGPGDGGVEQSHIARQGKTVTAIAATLERDGAQVRLGAVLWFEGTSSSASDLKKLWLLSESPEQTLEHWLSQHHAGGMRALRQMEKDGMGIWPYPSKKAFLARLRDYFEVGENAFTLLNRAAGLKQLNSIDEIFRELVLDDRSAFERAAEVASSFDDLTDIHRELETARKQQRSLQPVADGWERYRALQEQLQDKQALEGILPVWFAEQGYRLWLAETNRLEKEHKQAELDQAQCRSQLEIQKGVVDQHRQRYLRVGGAGIDQLRGRIADWVRECDKRRLKAEQYQRLAKGLGLADELSAAALEENQQQIAARLEILAQQTTDARQKAFDAGLVQQELNGRLQSLQQERAEVERRPGSNLPGHFHAFRGDLAQELGVDESALPFVAELVQVKPEELAWRGAIERAIGSHRLRILVPQGSSQAALRWVNQRHNRLHVRLLEVKEPSSRPVFFDDGFTRKLTFKEHPYREAVKALLADNDRHCVESTEQLRHTPHAMTAQGLMSGKERFFDKQDQKRLDEDWLTGFDNRDRLAFLAEQIREVNEQLVPAKLALDAAQGDVGQLESQASLLQRIEELQFDDIDRPGAERQLQSLRTQLDTLTRPDSNLAVIKAELDQAEALRESLDQQLQRLIEQCVQLKTQFDQAASATRKAYRGAEKGLSDTQRELAQAHFPILSTDDLGDIDELERKHTRELQGQLKTLGEKLGDQKTELAKRMSDALKADTGALAEVGRELVDVPRYLERLRVLTEEALPEKLKRFLEYLNRSSDDGVTQLLSYIDHEVSMIEERLDDLNSTMQRVDFQPGRYLRLVAKKVIHESLRTLQHAQRQLNSARFIDDEGESHYKALQALVGLLKDACEHSRNQGAKALLDPRFRLEFAVSVIDREGNNLIETRTGSQGGSGGEKEIIASYVLTASLSYALCPDGSSRPLFGTIVLDQAFSRSSHAVAGRIIAALREFGLHAVFITPNKEMRLLRHHTRSAVVVHRRGVESSLVSLSWEALDEHHQQRIRAMHEVAH
JetC D 1119 Puccinia Graminis F. Sp. Tritici (Strain Crl 75-36-700-3 / Race Sccl) , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) MKSSHHHHHHENLYFQSNAKQALLWRDSETFILTSIELYNWGGFQGYHRAEIDPSGTAVIGPTGSGKTTLVDALMTLLCANPRYNLASTGGHESDRDLVSYVRGVTGPGDGGVEQSHIARQGKTVTAIAATLERDGAQVRLGAVLWFEGTSSSASDLKKLWLLSESPEQTLEHWLSQHHAGGMRALRQMEKDGMGIWPYPSKKAFLARLRDYFEVGENAFTLLNRAAGLKQLNSIDEIFRELVLDDRSAFERAAEVASSFDDLTDIHRELETARKQQRSLQPVADGWERYRALQEQLQDKQALEGILPVWFAEQGYRLWLAETNRLEKEHKQAELDQAQCRSQLEIQKGVVDQHRQRYLRVGGAGIDQLRGRIADWVRECDKRRLKAEQYQRLAKGLGLADELSAAALEENQQQIAARLEILAQQTTDARQKAFDAGLVQQELNGRLQSLQQERAEVERRPGSNLPGHFHAFRGDLAQELGVDESALPFVAELVQVKPEELAWRGAIERAIGSHRLRILVPQGSSQAALRWVNQRHNRLHVRLLEVKEPSSRPVFFDDGFTRKLTFKEHPYREAVKALLADNDRHCVESTEQLRHTPHAMTAQGLMSGKERFFDKQDQKRLDEDWLTGFDNRDRLAFLAEQIREVNEQLVPAKLALDAAQGDVGQLESQASLLQRIEELQFDDIDRPGAERQLQSLRTQLDTLTRPDSNLAVIKAELDQAEALRESLDQQLQRLIEQCVQLKTQFDQAASATRKAYRGAEKGLSDTQRELAQAHFPILSTDDLGDIDELERKHTRELQGQLKTLGEKLGDQKTELAKRMSDALKADTGALAEVGRELVDVPRYLERLRVLTEEALPEKLKRFLEYLNRSSDDGVTQLLSYIDHEVSMIEERLDDLNSTMQRVDFQPGRYLRLVAKKVIHESLRTLQHAQRQLNSARFIDDEGESHYKALQALVGLLKDACEHSRNQGAKALLDPRFRLEFAVSVIDREGNNLIETRTGSQGGSGGEKEIIASYVLTASLSYALCPDGSSRPLFGTIVLDQAFSRSSHAVAGRIIAALREFGLHAVFITPNKEMRLLRHHTRSAVVVHRRGVESSLVSLSWEALDEHHQQRIRAMHEVAH
JetB F 249 Puccinia Graminis F. Sp. Tritici (Strain Crl 75-36-700-3 / Race Sccl) , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) MAGIFDRIAGASGADETELTAEPMALDDGMDGEQPAMSANIQVDERRTPQRVREAVQEMLKYGLLEESHKPNLYRSALTNIEVVDRILEPLDLAMGVDEVRGLVFVTVRQGEVAEQDDWSHPLVRRQRLNLEQSLLIAILRQHFIAYEQESGTGASQALVAVDELIPQLQVYLGELGSEAKERNRIITLLDQLKGHGLVSALDAHDRVIIRPIITHLANPENLQALVVWLREQVEGAVTPAAGGEEDEA
JetB G 249 Puccinia Graminis F. Sp. Tritici (Strain Crl 75-36-700-3 / Race Sccl) , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) MAGIFDRIAGASGADETELTAEPMALDDGMDGEQPAMSANIQVDERRTPQRVREAVQEMLKYGLLEESHKPNLYRSALTNIEVVDRILEPLDLAMGVDEVRGLVFVTVRQGEVAEQDDWSHPLVRRQRLNLEQSLLIAILRQHFIAYEQESGTGASQALVAVDELIPQLQVYLGELGSEAKERNRIITLLDQLKGHGLVSALDAHDRVIIRPIITHLANPENLQALVVWLREQVEGAVTPAAGGEEDEA
JetB H 249 Puccinia Graminis F. Sp. Tritici (Strain Crl 75-36-700-3 / Race Sccl) , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) MAGIFDRIAGASGADETELTAEPMALDDGMDGEQPAMSANIQVDERRTPQRVREAVQEMLKYGLLEESHKPNLYRSALTNIEVVDRILEPLDLAMGVDEVRGLVFVTVRQGEVAEQDDWSHPLVRRQRLNLEQSLLIAILRQHFIAYEQESGTGASQALVAVDELIPQLQVYLGELGSEAKERNRIITLLDQLKGHGLVSALDAHDRVIIRPIITHLANPENLQALVVWLREQVEGAVTPAAGGEEDEA
JetB I 249 Puccinia Graminis F. Sp. Tritici (Strain Crl 75-36-700-3 / Race Sccl) , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) MAGIFDRIAGASGADETELTAEPMALDDGMDGEQPAMSANIQVDERRTPQRVREAVQEMLKYGLLEESHKPNLYRSALTNIEVVDRILEPLDLAMGVDEVRGLVFVTVRQGEVAEQDDWSHPLVRRQRLNLEQSLLIAILRQHFIAYEQESGTGASQALVAVDELIPQLQVYLGELGSEAKERNRIITLLDQLKGHGLVSALDAHDRVIIRPIITHLANPENLQALVVWLREQVEGAVTPAAGGEEDEA

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (26-MER) p 26 NA TTTTTTTTTTTTTTTTTTTTTTTTTT
DNA (26-MER) q 26 NA AAAAAAAAAAAAAAAAAAAAAAAAAA
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2022-07-01
Deposition Author(s): Corbett, K. , Deep, A. , Ego, K. , Gao, Y. , Gu, Y. , Herzik, M. , Zhou, H.