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FASTA Sequence PDB Format mmCIF Format
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8DGW

Crystal structure of hcov-hku1 spike stem helix peptide in complex with fab of broadly neutralizing antibody cc95.108 isolated from a vaccinated covid-19 convalescent

PDB DOI: 10.2210/pdb8dgw/pdb

Classification: IMMUNE SYSTEM
Organism(s): Homo Sapiens , Synthetic Construct

Deposited: 2022-06-24
Deposition Author(s): Liu, H. , Wilson, I.A.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.81 Å

8dgw
Literature

Crystal structure of hcov-hku1 spike stem helix peptide in complex with fab of broadly neutralizing antibody cc95.108 isolated from a vaccinated covid-19 convalescent

Liu, H. , Wilson, I.A.

Primary Citation of Related Structures: 8DGW


Proteins
Molecule Chains Sequence Length Organism Sequence
Antibody CC95.108 Fab heavy chain H 220 Homo Sapiens , Synthetic Construct QVQLVQSGTEVRQPGASVRVSCKASGYTFTDSYIHWVRQAPGQGLEWMGIIKPSGGNTRYAQRFQGRVTMTRDTSTSTVYMELSSLRSEDTAVYYCARDSRGPGIFWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSC
Antibody CC95.108 Fab heavy chain A 220 Homo Sapiens , Synthetic Construct QVQLVQSGTEVRQPGASVRVSCKASGYTFTDSYIHWVRQAPGQGLEWMGIIKPSGGNTRYAQRFQGRVTMTRDTSTSTVYMELSSLRSEDTAVYYCARDSRGPGIFWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSC
Antibody CC95.108 Fab heavy chain C 220 Homo Sapiens , Synthetic Construct QVQLVQSGTEVRQPGASVRVSCKASGYTFTDSYIHWVRQAPGQGLEWMGIIKPSGGNTRYAQRFQGRVTMTRDTSTSTVYMELSSLRSEDTAVYYCARDSRGPGIFWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSC
Antibody CC95.108 Fab heavy chain E 220 Homo Sapiens , Synthetic Construct QVQLVQSGTEVRQPGASVRVSCKASGYTFTDSYIHWVRQAPGQGLEWMGIIKPSGGNTRYAQRFQGRVTMTRDTSTSTVYMELSSLRSEDTAVYYCARDSRGPGIFWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSC
Antibody CC95.108 Fab light chain L 216 Homo Sapiens , Synthetic Construct QSVLTQPPSVSAAPERKVTISCSGSSSNIGTNFVSWYQQLPGTAPKLLIYENNKRPSGIPDRFSGSKSGTSATLGITGLQTGDEADYYCGAWDSTPGTWVFGGGTRLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS
Antibody CC95.108 Fab light chain B 216 Homo Sapiens , Synthetic Construct QSVLTQPPSVSAAPERKVTISCSGSSSNIGTNFVSWYQQLPGTAPKLLIYENNKRPSGIPDRFSGSKSGTSATLGITGLQTGDEADYYCGAWDSTPGTWVFGGGTRLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS
Antibody CC95.108 Fab light chain D 216 Homo Sapiens , Synthetic Construct QSVLTQPPSVSAAPERKVTISCSGSSSNIGTNFVSWYQQLPGTAPKLLIYENNKRPSGIPDRFSGSKSGTSATLGITGLQTGDEADYYCGAWDSTPGTWVFGGGTRLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS
Antibody CC95.108 Fab light chain F 216 Homo Sapiens , Synthetic Construct QSVLTQPPSVSAAPERKVTISCSGSSSNIGTNFVSWYQQLPGTAPKLLIYENNKRPSGIPDRFSGSKSGTSATLGITGLQTGDEADYYCGAWDSTPGTWVFGGGTRLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECS
Spike protein S2' G 25 Homo Sapiens , Synthetic Construct HSVPKLSDFESELSHWFKNQTSIAP
Spike protein S2' I 25 Homo Sapiens , Synthetic Construct HSVPKLSDFESELSHWFKNQTSIAP
Spike protein S2' J 25 Homo Sapiens , Synthetic Construct HSVPKLSDFESELSHWFKNQTSIAP
Spike protein S2' K 25 Homo Sapiens , Synthetic Construct HSVPKLSDFESELSHWFKNQTSIAP
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2022-06-24
Deposition Author(s): Liu, H. , Wilson, I.A.