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8DFB

Structure of m. kandleri topoisomerase v in complex with dna. 39 base pair symmetric dna complex

PDB DOI: 10.2210/pdb8dfb/pdb

Classification: DNA BINDING PROTEIN/DNA
Organism(s): Methanopyrus Kandleri , Synthetic Construct

Deposited: 2022-06-21
Deposition Author(s): Mondragon, A. , Osterman, A.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.17 Å

Literature

Structure of m. kandleri topoisomerase v in complex with dna. 39 base pair symmetric dna complex

Mondragon, A. , Osterman, A.

Primary Citation of Related Structures: 8DFB


Proteins
Molecule Chains Sequence Length Organism Sequence
Topoisomerase V A 854 Methanopyrus Kandleri , Synthetic Construct MALVYDAEFVGSEREFEEERETFLKGVKAYDGVLATRYLMERSSSAKNDEELLELHQNFILLTGSYACSIDPTEDRYQNVIVRGVNFDERVQRLSTGGSPARYAIVYRRGWRAIAKALDIDEEDVPAIEVRAVKRNPLQPALYRILVRYGRVDLMPVTVDEVPPEMAGEFERLIERYDVPIDEKEERILEILRENPWTPHDEIARRLGLSVSEVEGEKDPESSGIYSLWSRVVVNIEYDERTAKRHVKRRDRLLEELYEHLEELSERYLRHPLTRRWIVEHKRDIMRRYLEQRIVECALKLQDRYGIREDVALCLARAFDGSISMIATTPYRTLKDVCPDLTLEEAKSVNRTLATLIDEHGLSPDAADELIEHFESIAGILATDLEEIERMYEEGRLSEEAYRAAVEIQLAELTKKEGVGRKTAERLLRAFGNPERVKQLAREFEIEKLASVEGVGERVLRSLVPGYASLISIRGIDRERAERLLKKYGGYSKVREAGVEELREDGLTDAQIRELKGLKTLESIVGDLEKADELKRKYGSASAVRRLPVEELRELGFSDDEIAEIKGIPKKLREAFDLETAAELYERYGSLKEIGRRLSYDDLLELGATPKAAAEIKGPEFKFLLNIEGVGPKLAERILEAVDYDLERLASLNPEELAEKVEGLGEELAERVVYAARERVESRRKSGRQERSEEEWKEWLERKVGEGRARRLIEYFGSAGEVGKLVENAEVSKLLEVPGIGDEAVARLVPGYKTLRDAGLTPAEAERVLKRYGSVSKVQEGATPDELRELGLGDAKIARILGLRSLVNARLDVDTAYELARRYGSVSAVRAAPVAELRELGLSDRAIARIAGIP
Topoisomerase V B 854 Methanopyrus Kandleri , Synthetic Construct MALVYDAEFVGSEREFEEERETFLKGVKAYDGVLATRYLMERSSSAKNDEELLELHQNFILLTGSYACSIDPTEDRYQNVIVRGVNFDERVQRLSTGGSPARYAIVYRRGWRAIAKALDIDEEDVPAIEVRAVKRNPLQPALYRILVRYGRVDLMPVTVDEVPPEMAGEFERLIERYDVPIDEKEERILEILRENPWTPHDEIARRLGLSVSEVEGEKDPESSGIYSLWSRVVVNIEYDERTAKRHVKRRDRLLEELYEHLEELSERYLRHPLTRRWIVEHKRDIMRRYLEQRIVECALKLQDRYGIREDVALCLARAFDGSISMIATTPYRTLKDVCPDLTLEEAKSVNRTLATLIDEHGLSPDAADELIEHFESIAGILATDLEEIERMYEEGRLSEEAYRAAVEIQLAELTKKEGVGRKTAERLLRAFGNPERVKQLAREFEIEKLASVEGVGERVLRSLVPGYASLISIRGIDRERAERLLKKYGGYSKVREAGVEELREDGLTDAQIRELKGLKTLESIVGDLEKADELKRKYGSASAVRRLPVEELRELGFSDDEIAEIKGIPKKLREAFDLETAAELYERYGSLKEIGRRLSYDDLLELGATPKAAAEIKGPEFKFLLNIEGVGPKLAERILEAVDYDLERLASLNPEELAEKVEGLGEELAERVVYAARERVESRRKSGRQERSEEEWKEWLERKVGEGRARRLIEYFGSAGEVGKLVENAEVSKLLEVPGIGDEAVARLVPGYKTLRDAGLTPAEAERVLKRYGSVSKVQEGATPDELRELGLGDAKIARILGLRSLVNARLDVDTAYELARRYGSVSAVRAAPVAELRELGLSDRAIARIAGIP

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (40-MER) u 40 NA GCCTGCACGAAGTAAGCATTGCTTACTTCGTGCAGGCACA
DNA (40-MER) v 40 NA GCCTGCACGAAGTAAGCAATGCTTACTTCGTGCAGGCACA
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2022-06-21
Deposition Author(s): Mondragon, A. , Osterman, A.