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FASTA Sequence PDB Format mmCIF Format
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8DF9

Structure of m. kandleri topoisomerase v in complex with dna. 38 base pair asymmetric dna complex

PDB DOI: 10.2210/pdb8df9/pdb

Classification: DNA BINDING PROTEIN/DNA
Organism(s): Methanopyrus Kandleri , Synthetic Construct

Deposited: 2022-06-21
Deposition Author(s): Mondragon, A. , Osterman, A.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.24 Å

8df9
Literature

Structure of m. kandleri topoisomerase v in complex with dna. 38 base pair asymmetric dna complex

Mondragon, A. , Osterman, A.

Primary Citation of Related Structures: 8DF9


Proteins
Molecule Chains Sequence Length Organism Sequence
Topoisomerase V A 854 Methanopyrus Kandleri , Synthetic Construct MALVYDAEFVGSEREFEEERETFLKGVKAYDGVLATRYLMERSSSAKNDEELLELHQNFILLTGSYACSIDPTEDRYQNVIVRGVNFDERVQRLSTGGSPARYAIVYRRGWRAIAKALDIDEEDVPAIEVRAVKRNPLQPALYRILVRYGRVDLMPVTVDEVPPEMAGEFERLIERYDVPIDEKEERILEILRENPWTPHDEIARRLGLSVSEVEGEKDPESSGIYSLWSRVVVNIEYDERTAKRHVKRRDRLLEELYEHLEELSERYLRHPLTRRWIVEHKRDIMRRYLEQRIVECALKLQDRYGIREDVALCLARAFDGSISMIATTPYRTLKDVCPDLTLEEAKSVNRTLATLIDEHGLSPDAADELIEHFESIAGILATDLEEIERMYEEGRLSEEAYRAAVEIQLAELTKKEGVGRKTAERLLRAFGNPERVKQLAREFEIEKLASVEGVGERVLRSLVPGYASLISIRGIDRERAERLLKKYGGYSKVREAGVEELREDGLTDAQIRELKGLKTLESIVGDLEKADELKRKYGSASAVRRLPVEELRELGFSDDEIAEIKGIPKKLREAFDLETAAELYERYGSLKEIGRRLSYDDLLELGATPKAAAEIKGPEFKFLLNIEGVGPKLAERILEAVDYDLERLASLNPEELAEKVEGLGEELAERVVYAARERVESRRKSGRQERSEEEWKEWLERKVGEGRARRLIEYFGSAGEVGKLVENAEVSKLLEVPGIGDEAVARLVPGYKTLRDAGLTPAEAERVLKRYGSVSKVQEGATPDELRELGLGDAKIARILGLRSLVNARLDVDTAYELARRYGSVSAVRAAPVAELRELGLSDRAIARIAGIP
Topoisomerase V B 854 Methanopyrus Kandleri , Synthetic Construct MALVYDAEFVGSEREFEEERETFLKGVKAYDGVLATRYLMERSSSAKNDEELLELHQNFILLTGSYACSIDPTEDRYQNVIVRGVNFDERVQRLSTGGSPARYAIVYRRGWRAIAKALDIDEEDVPAIEVRAVKRNPLQPALYRILVRYGRVDLMPVTVDEVPPEMAGEFERLIERYDVPIDEKEERILEILRENPWTPHDEIARRLGLSVSEVEGEKDPESSGIYSLWSRVVVNIEYDERTAKRHVKRRDRLLEELYEHLEELSERYLRHPLTRRWIVEHKRDIMRRYLEQRIVECALKLQDRYGIREDVALCLARAFDGSISMIATTPYRTLKDVCPDLTLEEAKSVNRTLATLIDEHGLSPDAADELIEHFESIAGILATDLEEIERMYEEGRLSEEAYRAAVEIQLAELTKKEGVGRKTAERLLRAFGNPERVKQLAREFEIEKLASVEGVGERVLRSLVPGYASLISIRGIDRERAERLLKKYGGYSKVREAGVEELREDGLTDAQIRELKGLKTLESIVGDLEKADELKRKYGSASAVRRLPVEELRELGFSDDEIAEIKGIPKKLREAFDLETAAELYERYGSLKEIGRRLSYDDLLELGATPKAAAEIKGPEFKFLLNIEGVGPKLAERILEAVDYDLERLASLNPEELAEKVEGLGEELAERVVYAARERVESRRKSGRQERSEEEWKEWLERKVGEGRARRLIEYFGSAGEVGKLVENAEVSKLLEVPGIGDEAVARLVPGYKTLRDAGLTPAEAERVLKRYGSVSKVQEGATPDELRELGLGDAKIARILGLRSLVNARLDVDTAYELARRYGSVSAVRAAPVAELRELGLSDRAIARIAGIP

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (33-MER) s 33 NA GCACGAAGTAAGCAATTCGTAATCATGGTGCGC
DNA (33-MER) t 33 NA GCGCACCATGATTACGAATTGCTTACTTCGTGC
DNA (5'-D(P*GP*CP*CP*TP*GP*CP*AP*CP*GP*AP*AP*GP*TP*AP*AP*GP*C)-3') u 17 NA GCCTGCACGAAGTAAGC
DNA (5'-D(P*TP*GP*CP*TP*TP*AP*CP*TP*TP*CP*GP*TP*GP*CP*AP*GP*GP*CP*CP*A)-3') v 20 NA TGCTTACTTCGTGCAGGCAT
DNA (5'-D(P*TP*GP*CP*TP*TP*AP*CP*TP*TP*CP*GP*TP*GP*CP*AP*GP*GP*CP*CP*A)-3') x 20 NA TGCTTACTTCGTGCAGGCAT
DNA (5'-D(P*GP*CP*CP*TP*GP*CP*AP*CP*GP*AP*AP*GP*TP*AP*AP*GP*CP*A)-3') w 18 NA GCCTGCACGAAGTAAGCA
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2022-06-21
Deposition Author(s): Mondragon, A. , Osterman, A.