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8DER

Cryo-em local refinement of antibody skv16 in complex with veev alphavirus spike glycoprotein

PDB DOI: 10.2210/pdb8der/pdb

Classification: VIRAL PROTEIN
Organism(s): Macaca , Venezuelan Equine Encephalitis Virus

Deposited: 2022-06-21
Deposition Author(s): Casner, R.G. , Roederer, M. , Shapiro, L. , Verardi, R.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.3 Å

Literature

Cryo-em local refinement of antibody skv16 in complex with veev alphavirus spike glycoprotein

Casner, R.G. , Roederer, M. , Shapiro, L. , Verardi, R.

Primary Citation of Related Structures: 8DER


Proteins
Molecule Chains Sequence Length Organism Sequence
SKV16 Fab Heavy Chain X 122 Macaca , Venezuelan Equine Encephalitis Virus VQLVESGGGLAKPGGSLRLSCAAAGFRFSDFHMHWVRQAPGKGLEWVSRISHGGVTTRFADSVKGRFTISRENAKNTLYLQMDNLRAEDTAVYYCARDSPYWGDYSHSLDVWGRGVLVTVSS
SKV16 Fab Heavy Chain H 122 Macaca , Venezuelan Equine Encephalitis Virus VQLVESGGGLAKPGGSLRLSCAAAGFRFSDFHMHWVRQAPGKGLEWVSRISHGGVTTRFADSVKGRFTISRENAKNTLYLQMDNLRAEDTAVYYCARDSPYWGDYSHSLDVWGRGVLVTVSS
SKV16 Fab Heavy Chain W 122 Macaca , Venezuelan Equine Encephalitis Virus VQLVESGGGLAKPGGSLRLSCAAAGFRFSDFHMHWVRQAPGKGLEWVSRISHGGVTTRFADSVKGRFTISRENAKNTLYLQMDNLRAEDTAVYYCARDSPYWGDYSHSLDVWGRGVLVTVSS
SKV16 Fab Light Chain Y 105 Macaca , Venezuelan Equine Encephalitis Virus PMRLTQPRSVSVSPGQTARITCGGDNIGSKSVHWYQQKPPQAPVLVIYDDRARPSGIPERFSGSKSGNTATLAISGVEAGDEADYYCQVWDSSSDVLFGGGTRLT
SKV16 Fab Light Chain L 105 Macaca , Venezuelan Equine Encephalitis Virus PMRLTQPRSVSVSPGQTARITCGGDNIGSKSVHWYQQKPPQAPVLVIYDDRARPSGIPERFSGSKSGNTATLAISGVEAGDEADYYCQVWDSSSDVLFGGGTRLT
SKV16 Fab Light Chain V 105 Macaca , Venezuelan Equine Encephalitis Virus PMRLTQPRSVSVSPGQTARITCGGDNIGSKSVHWYQQKPPQAPVLVIYDDRARPSGIPERFSGSKSGNTATLAISGVEAGDEADYYCQVWDSSSDVLFGGGTRLT
Spike glycoprotein E1 G 402 Macaca , Venezuelan Equine Encephalitis Virus YEHATTMPSQAGISYNTIVNRAGYAPLPISITPTKIKLIPTVNLEYVTCHYKTGMDSPAIKCCGSQECTPTYRPDEQCKVFTGVYPFMWGGAYCFCDTENTQVSKAYVMKSDDCLADHAEAYKAHTASVQAFLNITVGEHSIVTTVYVNGETPVNFNGVKITAGPLSTAWTPFDRKIVQYAGEIYNYDFPEYGAGQPGAFGDIQSRTVSSSDLYANTNLVLQRPKAGAIHVPYTQAPSGFEQWKKDKAPSLKFTAPFGCEIYTNPIRAENCAVGSIPLAFDIPDALFTRVSETPTLSAAECTLNECVYSSDFGGIATVKYSASKSGKCAVHVPSGTATLKEAAVELTEQGSATIHFSTANIHPEFRLQICTSYVTCKGDCHPPKDHIVTHPQYHAQTFTAAV
Spike glycoprotein E1 E 402 Macaca , Venezuelan Equine Encephalitis Virus YEHATTMPSQAGISYNTIVNRAGYAPLPISITPTKIKLIPTVNLEYVTCHYKTGMDSPAIKCCGSQECTPTYRPDEQCKVFTGVYPFMWGGAYCFCDTENTQVSKAYVMKSDDCLADHAEAYKAHTASVQAFLNITVGEHSIVTTVYVNGETPVNFNGVKITAGPLSTAWTPFDRKIVQYAGEIYNYDFPEYGAGQPGAFGDIQSRTVSSSDLYANTNLVLQRPKAGAIHVPYTQAPSGFEQWKKDKAPSLKFTAPFGCEIYTNPIRAENCAVGSIPLAFDIPDALFTRVSETPTLSAAECTLNECVYSSDFGGIATVKYSASKSGKCAVHVPSGTATLKEAAVELTEQGSATIHFSTANIHPEFRLQICTSYVTCKGDCHPPKDHIVTHPQYHAQTFTAAV
Spike glycoprotein E1 F 402 Macaca , Venezuelan Equine Encephalitis Virus YEHATTMPSQAGISYNTIVNRAGYAPLPISITPTKIKLIPTVNLEYVTCHYKTGMDSPAIKCCGSQECTPTYRPDEQCKVFTGVYPFMWGGAYCFCDTENTQVSKAYVMKSDDCLADHAEAYKAHTASVQAFLNITVGEHSIVTTVYVNGETPVNFNGVKITAGPLSTAWTPFDRKIVQYAGEIYNYDFPEYGAGQPGAFGDIQSRTVSSSDLYANTNLVLQRPKAGAIHVPYTQAPSGFEQWKKDKAPSLKFTAPFGCEIYTNPIRAENCAVGSIPLAFDIPDALFTRVSETPTLSAAECTLNECVYSSDFGGIATVKYSASKSGKCAVHVPSGTATLKEAAVELTEQGSATIHFSTANIHPEFRLQICTSYVTCKGDCHPPKDHIVTHPQYHAQTFTAAV
Spike glycoprotein E2 C 345 Macaca , Venezuelan Equine Encephalitis Virus STEELFNEYKLTRPYMARCIRCAVGSCHSPIAIEAVKSDGHDGYVRLQTSSQYGLDSSGNLKGRTMRYDMHGTIKEIPLHQVSLYTSRPCHIVDGHGYFLLARCPAGDSITMEFKKDSVRHSCSVPYEVKFNPVGRELYTHPPEHGVEQACQVYAHDAQNRGAYVEMHLPGSEVDSSLVSLSGSSVTVTPPDGTSALVECECGGTKISETINKTKQFSQCTKKEQCRAYRLQNDKWVYNSDKLPKAAGATLKGKLHVPFLLADGKCTVPLAPEPMITFGFRSVSLKLHPKNPTYLITRQLADEPHYTHELISEPAVRNFTVTEKGWEFVWGNHPPKRFWAQETAP
Spike glycoprotein E2 B 345 Macaca , Venezuelan Equine Encephalitis Virus STEELFNEYKLTRPYMARCIRCAVGSCHSPIAIEAVKSDGHDGYVRLQTSSQYGLDSSGNLKGRTMRYDMHGTIKEIPLHQVSLYTSRPCHIVDGHGYFLLARCPAGDSITMEFKKDSVRHSCSVPYEVKFNPVGRELYTHPPEHGVEQACQVYAHDAQNRGAYVEMHLPGSEVDSSLVSLSGSSVTVTPPDGTSALVECECGGTKISETINKTKQFSQCTKKEQCRAYRLQNDKWVYNSDKLPKAAGATLKGKLHVPFLLADGKCTVPLAPEPMITFGFRSVSLKLHPKNPTYLITRQLADEPHYTHELISEPAVRNFTVTEKGWEFVWGNHPPKRFWAQETAP
Spike glycoprotein E2 A 345 Macaca , Venezuelan Equine Encephalitis Virus STEELFNEYKLTRPYMARCIRCAVGSCHSPIAIEAVKSDGHDGYVRLQTSSQYGLDSSGNLKGRTMRYDMHGTIKEIPLHQVSLYTSRPCHIVDGHGYFLLARCPAGDSITMEFKKDSVRHSCSVPYEVKFNPVGRELYTHPPEHGVEQACQVYAHDAQNRGAYVEMHLPGSEVDSSLVSLSGSSVTVTPPDGTSALVECECGGTKISETINKTKQFSQCTKKEQCRAYRLQNDKWVYNSDKLPKAAGATLKGKLHVPFLLADGKCTVPLAPEPMITFGFRSVSLKLHPKNPTYLITRQLADEPHYTHELISEPAVRNFTVTEKGWEFVWGNHPPKRFWAQETAP
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2022-06-21
Deposition Author(s): Casner, R.G. , Roederer, M. , Shapiro, L. , Verardi, R.