Crystal structure of clostridioides difficile binary toxin cdtb d4 fragment in complex with bintoxb/9 fab
PDB DOI: 10.2210/pdb8dcn/pdb
Classification: TOXIN/IMMUNE SYSTEM Organism(s): Clostridioides Difficile , Mus Musculus
Deposited: 2022-06-16 Deposition Author(s): Goldsmith, J.A. , Mclellan, J.S.
Crystal structure of clostridioides difficile binary toxin cdtb d4 fragment in complex with bintoxb/9 fab
Goldsmith, J.A. , Mclellan, J.S.
Primary Citation of Related Structures: 8DCN
Proteins | ||||
---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Sequence |
BINTOXB/9 Fab heavy chain | A | 231 | Clostridioides Difficile , Mus Musculus | QVQLQQSGAELARPGASVKMSCKASGYTFTSYTMHWVKQRPGQGLEWIGYINPSNDYTSYNQKFKDKATLTADKSSSTAYMQLSSLTSEDSAVYYCARCWGYDPYYFDYWGQGTTLTVSSASTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVPRDCGKGLEVLFQ |
BINTOXB/9 Fab heavy chain | D | 231 | Clostridioides Difficile , Mus Musculus | QVQLQQSGAELARPGASVKMSCKASGYTFTSYTMHWVKQRPGQGLEWIGYINPSNDYTSYNQKFKDKATLTADKSSSTAYMQLSSLTSEDSAVYYCARCWGYDPYYFDYWGQGTTLTVSSASTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVPRDCGKGLEVLFQ |
BINTOXB/9 Fab light chain | B | 219 | Clostridioides Difficile , Mus Musculus | DIVMSQSPSLLAVSAGEKVTMSCKSSQSLLNSRTRKNYLAWYQQKPGQSPKVLIYWASTRESGVPDRFTGSGSGTDFTLTISSVQAEDLAVYYCKQSYNLLTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC |
BINTOXB/9 Fab light chain | E | 219 | Clostridioides Difficile , Mus Musculus | DIVMSQSPSLLAVSAGEKVTMSCKSSQSLLNSRTRKNYLAWYQQKPGQSPKVLIYWASTRESGVPDRFTGSGSGTDFTLTISSVQAEDLAVYYCKQSYNLLTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC |
ADP-ribosylating binary toxin binding subunit CdtB | C | 130 | Clostridioides Difficile , Mus Musculus | MKIPTDQEIMDAHKIYFADLNFNPSTGNTYINGMYFAPTQTNKEALDYIQKYRVEATLQYSGFKDIGTKDKEMRNYLGDPNQPKTNYVNLRSYFTGGENIMTYKKLRIYAITPDDRELLVLSVDHHHHHH |
ADP-ribosylating binary toxin binding subunit CdtB | F | 130 | Clostridioides Difficile , Mus Musculus | MKIPTDQEIMDAHKIYFADLNFNPSTGNTYINGMYFAPTQTNKEALDYIQKYRVEATLQYSGFKDIGTKDKEMRNYLGDPNQPKTNYVNLRSYFTGGENIMTYKKLRIYAITPDDRELLVLSVDHHHHHH |
Method: X-RAY DIFFRACTION
Deposited Date: 2022-06-16 Deposition Author(s): Goldsmith, J.A. , Mclellan, J.S.