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FASTA Sequence PDB Format mmCIF Format
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8DCM

Crystal structure of clostridioides difficile binary toxin procdtb lacking d4 in complex with bintoxb/22 fab

PDB DOI: 10.2210/pdb8dcm/pdb

Classification: TOXIN/IMMUNE SYSTEM
Organism(s): Clostridioides Difficile , Mus Musculus

Deposited: 2022-06-16
Deposition Author(s): Goldsmith, J.A. , Mclellan, J.S.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.5 Å

8dcm
Literature

Crystal structure of clostridioides difficile binary toxin procdtb lacking d4 in complex with bintoxb/22 fab

Goldsmith, J.A. , Mclellan, J.S.

Primary Citation of Related Structures: 8DCM


Proteins
Molecule Chains Sequence Length Organism Sequence
BINTOXB/22 Fab heavy chain A 229 Clostridioides Difficile , Mus Musculus QIQLVQSGPELKKPGETVKISCKASGYTFTNYGMNWVKQAPGKDLKWMGWMSTYTGEPTYADDFKGRFAFSLETSASTAYLQINNLKNEDMATYFCARRGNYLSFDYWGQGTTLTVSSASTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPSETVTCNVAHPASSTKVDKKIVPRDCGKGLEVLFQ
BINTOXB/22 Fab light chain B 212 Clostridioides Difficile , Mus Musculus DIVMTQSHKFMSTSVGDRVSITCKASQDVSTAVGWYQQKPGQSPKLLIYSASYRYTGVPDRFTGSGSGTDFTFTISSVQAEDLAVYYCQQHYSPPFTFGSGTELEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATQGTTSIVKSFNRNEC
ADP-ribosylating binary toxin binding subunit CdtB C 711 Clostridioides Difficile , Mus Musculus MEIVNEDILPNNGLMGYYFTDEHFKDLKLMAPIKDGNLKFEEKKVDKLLDKDKSDVKSIRWTGRIIPSKDGEYTLSTDRDDVLMQVNTESTISNTLKVNMKKGKEYKVRIELQDKNLGSIDNLSSPNLYWELDGMKKIIPEENLFLRDYSNIEKDDPFIPNNNFFDPKLMSDWEDEDLDTDNDNIPDSYERNGYTIKDLIAVKWEDSFAEQGYKKYVSNYLESNTAGDPYTDYEKASGSFDKAIKTEARDPLVAAYPIVGVGMEKLIISTNEHASTDQGKTVSRATTNSKTESNTAGVSVNVGYQNGFTANVTTNYSHTTDNSTAVQDSNGESWNTGLSINKGESAYINANVRYYNTGTAPMYKVTPTTNLVLDGDTLSTIKAQENQIGNNLSPGDTYPKKGLSPLALNTMDQFSSRLIPINYDQLKKLDAGKQIKLETTQVSGNFGTKNSSGQIVTEGNSWSDYISQIDSISASIILDTENESYERRVTAKNLQDPEDKTPELTIGEAIEKAFGATKKDGLLYFNDIPIDESCVELIFDDNTANKIKDSLKTLSDKKIYNVKLERGMNILIKTPTYFTNFDDYNNYPSTWSNVNTTNQDGLQGSANKLNGETKIKIPMSELKPYKRYVFSGYSKDPLTSNSIIVKIKAKEEKTDYLVPEQGYTKFSYEFETTEKDSSNIEITLIGSGTTYLDNLSITELNSTPEHHHHHH
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2022-06-16
Deposition Author(s): Goldsmith, J.A. , Mclellan, J.S.