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FASTA Sequence PDB Format mmCIF Format
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8D9H

Gramp-tpr-chat match pfs target rna(craspase)

PDB DOI: 10.2210/pdb8d9h/pdb

Classification: RNA BINDING PROTEIN/RNA
Organism(s): Candidatus Scalindua Brodae

Deposited: 2022-06-09
Deposition Author(s): Hu, C. , Ke, A. , Nam, K.H. , Schuler, G.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.6 Å

8d9h
Literature

Gramp-tpr-chat match pfs target rna(craspase)

Hu, C. , Ke, A. , Nam, K.H. , Schuler, G.

Primary Citation of Related Structures: 8D9H


Proteins
Molecule Chains Sequence Length Organism Sequence
RAMP superfamily protein B 1270 Candidatus Scalindua Brodae MNITVELTFFEPYRLVEWFDWDARKKSHSAMRGQAFAQWTWKGKGRTAGKSFITGTLVRSAVIKAVEELLSLNNGKWEGVPCCNGSFQTDESKGKKPSFLRKRHTLQWQANNKNICDKEEACPFCILLGRFDNAGKVHERNKDYDIHFSNFDLDHKQEKNDLRLVDIASGRILNRVDFDTGKAKDYFRTWEADYETYGTYTGRITLRNEHAKKLLLASLGFVDKLCGALCRIEVIKDHNDELRKQAEVIVEAFKQNDKLEKIRILADAIRTLRLHGEGVIEKDELPDGKEERDKGHHLWDIKVQGTALRTKLKELWQSNKDIGWRKFTEMLGSNLYLIYKKETGGVSTEYYSKAHDSEGSDLFIPVTPPEGIETKEWIIVGRLKAATPFYFGVQQPSDSIPGKEINEHTSFNILLDKENRYRIPRSALRGALRRDLRTAFGSGCNVSLGGQILCNCKVCIEMRRITLKDSVSDFSEPPEIRYRIAKNPGTATVEDGSLFDIEVGPEGLTFPFVLRYRGHKFPEQLSSVIRYWEENDGKNGMAWLGGLDSTGKGRFALKDIKIFEWDLNQKINEYIKERGMRGKEKELLEMGESSLPDGLIPYKFFEERECLFPYKENLKPQWSEVQYTIEVGSPLLTADTISALTEPGNRDAIAYKKRVYNDGNNAIEPEPRFAVKSETHRGIFRTAVGRRTGDLGKEDHEDCTCDMCIIFGNEHESSKIRFEDLELINGNEFEKLEKHIDHVAIDRFTGGALDKAKFDTYPLAGSPKKPLKLKGRFWIKKGFSGDHKLLITTALSDIRDGLYPLGSKGGVGYGWVAGISIDDNVPDDFKEMINKTNNDYVHPGHQSPKQDHKNKNIYYPHYFLDSGSKVYREKDIITHEEFTEELLSGKINCKLETLTPLIIPDTSDENGLKLQGNKPGHKNYKFFNINGELMIPGSELRGMLRTHFEALTKSCFAIFGEDSTLSWASKTLGGKLDKALHPCTGLSDGLCPGCHLFGTTDYKGRVKFGFAKYENGPEWLITRGNNPERSLTLGVLESPRPAFSIPDDESEIPGRKFYLHHNGWRIIRQKQLEIRETVQPERNVTTEVMDKGNVFSFDVRFENLREWELGLLLQSLDPGKNIAHKLGKGKPYGFGSVKIKIDSLHTFKINSNNDKIKRVPQSDIREYINKGYQKLIEWSGNNSIQKGNVLPQWHVIPHIDKLYKLLWVPFLNDSKLEPDVRYPVLNEESKGYIEGSDYTYKKLGDKDNLPYKTRVKGLTTPWSPWNPFQV
CHAT domain protein E 666 Candidatus Scalindua Brodae TREDIDRKEAERLLDEAFNPRTKPVDRKKIINSALKILIGLYKEKKDDLTSASFISIARAYYLVSITILPKGTTIPEKKKEALRKGIEFIDRAINKFNGSILDSQRAFRIKSVLSIEFNRIDREKCDNIKLKNLLNEAVDKGCTDFDTYEWDIQIAIRLCELGVDMEGHFDNLIKSNKANDLQKAKAYYFIKKDDHKAKEHMDKCTASLKYTPCSHRLWDETVGFIERLKGDSSTLWRDFAIKTYRSCRVQEKETGTLRLRWYWSRHRVLYDMAFLAVKEQADVNVKQAKIKKLAEISDSLKSRFSLRLSDMEKMPKSDDESNHEFKKFLDKCVTAYQDGYVIKLLELTQVPEGWVVVHFYLNKLEGMGNAIVFDKCANSWQYKEFQYKELFEVFLTWQANYNLYKENAAEHLVTLCKKIGETMPFLFCDNFIPNGKDVLFVPHDFLHRLPLHGSIENKTNGKLFLENHSCCYLPAWSFASEKEASTSDEYVLLKNFDQGHFETLQNNQIWGTQSVKDGASSDDLENIRNNPRLLTILCHGEANMSNPFRSMLKLANGGITYLEILNSVKGLKGSQVILGACETDLVPPLSHYSVATALLLIGAAGVVGTMWKVRSNKTKSLIEWKLENIEYKLNEWQKETGGAAYKDHPPTFYRSIAFRSIGFPL

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
RNA (36-MER) c 36 NA GACUUAAUGUCACGGUACCCAAUUUUCUGCCCCGGA
RNA (5'-R(P*UP*CP*CP*GP*GP*GP*GP*CP*AP*GP*AP*AP*AP*AP*UP*UP*GP*GP*GP*U)-3') d 20 NA UCCGGGGCAGAAAAUUGGGU
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2022-06-09
Deposition Author(s): Hu, C. , Ke, A. , Nam, K.H. , Schuler, G.