8D8J
Yeast mitochondrial small subunit assembly intermediate (state 1)
PDB DOI: 10.2210/pdb8d8j/pdb
Classification: RIBOSOME Organism(s): Grouper Iridovirus
Deposited: 2022-06-08 Deposition Author(s): Burnside, C. , Harper, N. , Klinge, S.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 3.8 Å
Yeast mitochondrial small subunit assembly intermediate (state 1)
Burnside, C. , Harper, N. , Klinge, S.
Primary Citation of Related Structures: 8D8J
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Probable S-adenosyl-L-methionine-dependent RNA methyltransferase RSM22, mitochondrial | 0 | 628 | Grouper Iridovirus | MMKRCFSILPQNVRFSSKFTSLNLPKLDLADFIDSNKRGINVLPSYRDETASTTQATNSKELRLLSKTLQGQSYRDQLELNPDVSKAINNNIMAVHIPNNLRRVATNYYKEIQEPNSLHRPCRTKMEVDAHIASIFLQNYGSIFQSLKELQKRVGPDNFKPQRILDVGYGPATGIVALNDILGPNYRPDLKDAVILGNAEMQERAKIILSRQLNEVVDTVEENVSTEKEQETDRRNKNFQEDEHIGEVMTKKINIMTNLRSSIPASKEYDLIILTHQLLHDGNQFPIQVDENIEHYLNILAPGGHIVIIERGNPMGFEIIARARQITLRPENFPDEFGKIPRPWSRGVTVRGKKDAELGNISSNYFLKVIAPCPHQRKCPLQVGNPNFYTHKEGKDLKFCNFQKSIKRPKFSIELKKGKLLATSWDGSQGNASRLKGTGRRNGRDYEILNYSYLIFERSHKDENTLKEIKKLRNENVNGKYDIGSLGDDTQNSWPRIINDPVKRKGHVMMDLCAPSGELEKWTVSRSFSKQIYHDARKSKKGDLWASAAKTQIKGLGDLNVKKFHKLEKERIKQLKKEERQKARKAMESYNELEDSLQFDDHQFSNFEVMKKLSTFHGNDFLQHVNRK |
| Mitochondrial group I intron splicing factor CCM1 | D | 864 | Grouper Iridovirus | MYMARCGPKNNVLCFPFQLSFLFSKRLINKRFKYTLQTEDEKNMMGSLSKNKIITPEDVEFKLAQLREFSNTLKERIHNTKSVNSDGHQSNSIAPISEDSRNVNVTKTSSVPNEEKSKNLSDLIHSSFLEKMDHLVPKVIRERVADDDILAKNLFDRSHSNWAPVIDRLYVSEKRFMDIDSREFSVWLNGTVKYLPFHSILHLDEMLLEQINGDVVKFNTHMYECIFNNLGNLKPTNFNQDGTNDKVILKMKELLERYDKALKITEERINKKEGFPSKVPKMTQAILNNCLKYSTKCSSFHDMDYFITKFRDDYGITPNKQNLTTVIQFYSRKEMTKQAWNTFDTMKFLSTKHFPDICTYNTMLRICEKERNFPKALDLFQEIQDHNIKPTTNTYIMMARVLASSSSNAVVSEGKSDSLRLLGWKYLHELEDKNLYRHKKDDLNLFLAMMALAAFDGDIELSRALYYLFIAKKYKTLCANWKGNILVDQDTIWKSTLMPEMLNYLMLAYARFDPRNLPVLSGYEKGIELRRKFLREFDSSMRLDDTDKLVKFKLPFLPISDLNSEAQVLAESNAIWSFNMENGGTRNTLTSSNEAALEDIKKYRQLLDSFAQEAEDFNEFKFKVMYEVTKMQRESINVNVFNKISLHTYLSIPINLKQQKEFLRRLTFFTFQQHEFEAVIKRLYEGYRNIPSSHTRDQNSISTEAISVSKPETTEDLNLIMHDIWYITCLRHKIMMDTTLYELVMKAAIEFQNEDLAKKVWNDRGKFRTTVPFLKMDQRIRIAKDQKFAHLMVEFFTKQGKYSDAIAIILSSKNRFNWTYSMVRNLHKALEEIEDRNSVEILLDVVNKKSHAKALKWEEQELNM |
| 37S ribosomal protein S5, mitochondrial | E | 307 | Grouper Iridovirus | MFKRQLSTSVRYLQHYDESLLSRYYPESLLKSIKLAQQTIPEDTKFRVSRNVEFAPPYLDDFTKIHPFWDYKPGMPHLHAQEENNNFSIFRWDQVQQPLPGEGNILPPGVSLPNDGGRKSKSADVAAGLHKQTGVDPDYITRKLTMKPLVMKRVSNQTGKGKIASFYALVVVGDKNGMVGLGEGKSREEMSKAIFKAHWDAVRNLKEIPRYENRTIYGDIDFRYHGVKLHLRSAKPGFGLRVNHVIFEICECAGIKDLSGKVYKSRNDMNIAKGTIEAFTKAQKTLDEVALGRGKKLVDVRKVYYSS |
| 37S ribosomal protein MRP17, mitochondrial | F | 131 | Grouper Iridovirus | MLYELIGLVRITNSNAPKLEAKELSSTIGKLIIQNRGVVRDIVPMGIRYLPKIMKKDQEKHFRAYHFLMLFDSSAAVQSEILRTLKKDPRVIRSSIVKVDLDKQLDRASSLHRSLGKKSILELVNEDYQSI |
| 37S ribosomal protein S35, mitochondrial | 6 | 345 | Grouper Iridovirus | MSYGLTGTSSKLRGTSSIFSWTQVRHFSRRRIAYPFYPFKKLGRQHPKKHDTNLKTAMRQFLGPKNYKGEYVMNKYFTVPTNHVPNYIKPDLERGQSLEHPVTKKPLQLRYDGTLGPPPVENKRLQNIFKDRLLQPFPSNPHCKTNYVLSPQLKQSIFEEITVEGLSAQQVSQKYGLKIPRVEAIVKLVSVENSWNRRNRVSSDLKTMDETLYRMFPVFDSDASFKRENLSEIPVPQKTLASRFLTIAESEPFGPVDAAHVLELEPAVETLRNLSTVGEHSSGHQQSTNKNTKVIYGELVEGERSQYKFTNAKVGKVGYRYGSGNRDNKKDRRIGFNKLGQMVYI |
| 37S ribosomal protein S8, mitochondrial | H | 155 | Grouper Iridovirus | MSLVKLANTCAHLQNCSKVRVALTSIPYTKLQLQFAYNLYQQGFLSSLQKGSTMGPDKDFVEVTPDNISTRRLWVGLKYRDNKPVLSSCKLISKPNSRIHLPMEDMKKLCSGVTIRNIKPLQPGELILVRAHNNIMDINEAISKKLDGEVLCRVK |
| uS12m | L | 153 | Grouper Iridovirus | MLSRFMSNTWCTPLRQAQRLFSSTTTMQATLNQIKRGSGPPRRKKISTAPQLDQCPQRKGVVLRVMVLKPKKPNSAQRKACRVRLTNGNVVSAYIPGEGHDAQEHSIVYVRGGRCQDLPGVKYHVIRGAGDLSGVVNRISSRSKYGAKKPSKS |
| 37S ribosomal protein MRP13, mitochondrial | 5 | 339 | Grouper Iridovirus | MGTITVVINEGPILLIRALHRATTNKKMFRSTVWRRFASTGEIAKAKLDEFLIYHKTDAKLKPFIYRPKNAQILLTKDIRDPKTREPLQPRPPVKPLSKQTLNDFIYSVEPNSTELLDWFKEWTGTSIRKRAIWTYISPIHVQKMLTASFFKIGKYAHMVGLLYGIEHKFLKAQNPSVFDIEHFFNTNIMCALHRNRLKDYKDAEIAQRKLQVAWKKVLNRKNNTGLANILVATLGRQIGFTPELTGLQPVDISLPDIPNSSSGAELKDLLSKYEGIYLIARTLLDIDQHNAQYLELQEFIRQYQNALSESSDPYDTHLKALGLLETPPPQESTEKEEK |
| 37S ribosomal protein S28, mitochondrial | O | 286 | Grouper Iridovirus | MSIVGRNAILNLRISLCPLFMGKRSFVSSPVSNSAKAVKFLKAQRRKQKNEAKQATLKASTDKVDPVLGRADTPFITRIMAELKEPLVLSKGYNIEEVDKFLAAIESAKRERAELSGLNTEVVGIEDIEKLEDRREAILRILSMRNSENKNAIKMAVELARKEFERFPGDTGSSEVQAACMTVRIQNMANHIKEHRKDFANTRNLRILVQQRQAILRYLKRDNPEKYYWTIQKLGLNDAAITDEFNMDRRYMQDYEFFGDKILIRDSKKVANQKRKEIRKQKRATF |
| 37S ribosomal protein S16, mitochondrial | P | 121 | Grouper Iridovirus | MTCGLVRIRLARFGRKNSPVYNIVVANSRKARDAKPIEVLGTYVPVPSPVTKRELKRGVVPIKDVKLDFDRTKYWIGVGAQPSETVTKLLRKAGILNDAWATSKNSNVNRKVVFERMETLE |
| 37S ribosomal protein S17, mitochondrial | Q | 237 | Grouper Iridovirus | MARQNFLGLVVSQGKMQKTVKVRVETKVFNKKINKELFHRRDYLVHDEGEISREGDLVRIEATRPLSKRKFFAIAEIIRNKGQQFALYESEAQLSVAKEEAQKAKEFLDKRSVRENKLNEKTTLLRDIRTIQDALSSGSTPKELLEIKQRYGIQDFSQETVRQLLQLDISGLEVNLEKQRSLIDRIQTRLSELLSNDLKCDQFLKDHGVEDPLTLKKNIKKNLLRKHVMMDMQQPSQ |
| 37S ribosomal protein RSM18, mitochondrial | R | 138 | Grouper Iridovirus | MQPIIKGAVSSTFKRALYNFGIKEKKSVNIEMGRTQQTKKIDQSLSKKLPKGTIYDPFDFSMGRIHLDRKYQANKNSNRNDIMKSGANPLEFYARPRILSRYVTSTGRIQHRDITGLSAKNQRRLSKAIRRCQAIGLM |
| 37S ribosomal protein PET123, mitochondrial | V | 318 | Grouper Iridovirus | MGKGAAKYGFKSGVFPTTRSILKSPTTKQTDIINKVKSPKPKGVLGIGYAKGVKHPKGSHRLSPKVNFIDVDNLIAKTVAEPQSIKSSNGSAQKVRLQKAELRRKFLIEAFRKEEARLLHKHEYLQKRTKELEKAKELELEKLNKEKSSDLTIMTLDKMMSQPLLRNRSPEESELLKLKRNYNRSLLNFQAHKKKLNELLNLYHVANEFIVTESQLLKKIDKVFNDETEEFTDAYDVTSNFTQFGNRKLLLSGNTTLQTQINNAIMGSLSNEKFFDISLVDSYLNKDLKNISNKIDSKLNPTSNGAGNNGNNNNTTNL |
| Protein FYV4, mitochondrial | 2 | 130 | Grouper Iridovirus | MIPSRISHKFPLFLRSSLAAPKAAYRFSSTIPKPSDQVPDVDAFLNKIGRNCNELKDTFENNWNNLFQWDSKILKEKGVNIQQRKYILKQVHNYRNNRPIHEIKLGKKSFFGGERKRKAFTAKWKAENKQ |
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| 15S ribosomal RNA | a | 1713 | NA | UUUUAUAUAAUAAUAAUAAUAUAUAUAUAUAUAUAUUAUUAUAUUAGUUAUAUAAUAAGGAAAAGUAAAAAAUUUAUAAGAAUAUGAUGUUGGUUCAGAUUAAGCGCUAAAUAAGGACAUGACACAUGCGAAUCAUACGUUUAUUAUUGAUAAGAUAAUAAAUAUGUGGUGUAAACGUGAGUAAUUUUAUUAGGAAUUAAUGAACUAUAGAAUAAGCUAAAUACUUAAUAUAUUAUUAUAUAAAAAUAAUUUAUAUAAUAAAAAGGAUAUAUAUAUAAUAUAUAUUUAUCUAUAGUCAAGCCAAUAAUGGUUUAGGUAGUAGGUUUAUUAAGAGUUAAACCUAGCCAACGAUCCAUAAUCGAUAAUGAAAGUUAGAACGAUCACGUUGACUCUGAAAUAUAGUCAAUAUCUAUAAGAUACAGCAGUGAGGAAUAUUGGACAAUGAUCGAAAGAUUGAUCCAGUUACUUAUUAGGAUGAUAUAUAAAAAUAUUUUAUUUUAUUUAUAAAUAUUAAAUAUUUAUAAUAAUAAUAAUAAUAAUAUAUAUAUAUAAAUUGAUUAAAAAUAAAAUCCAUAAAUAAUUAAAAUAAUGAUAUUAAUUACCAUAUAUAUUUUUAUAUGGAUAUAUAUAUUAAUAAUAAUAUUAAUUUUAUUAUUAUUAAUAAUAUAUUUUAAUAGUCCUGACUAAUAUUUGUGCCAGCAGUCGCGGUAACACAAAGAGGGCGAGCGUUAAUCAUAAUGGUUUAAAGGAUCCGUAGAAUGAAUUAUAUAUUAUAAUUUAGAGUUAAUAAAAUAUAAUUAAAGAAUUAUAAUAGUAAAGAUGAAAUAAUAAUAAUAAUUAUAAGACUAAUAUAUGUGAAAAUAUUAAUUAAAUAUUAACUGACAUUGAGGGAUUAAAACUAGAGUAGCGAAACGGAUUCGAUACCCGUGUAGUUCUAGUAGUAAACUAUGAAUACAAUUAUUUAUAAUAUAUAUUAUAUAUAAAUAAUAAAUGAAAAUGAAAGUAUUCCACCUGAAGAGUACGUUAGCAAUAAUGAAACUCAAAACAAUAGACGGUUACAGACUUAAGCAGUGGAGCAUGUUAUUUAAUUCGAUAAUCCACGACUAACCUUACCAUAUUUUGAAUAUUAUAAUAAUUAUUAUAAUUAUUAUAUUACAGGCGUUACAUUGUUGUCUUUAGUUCGUGCUGCAAAGUUUUAGAUUAAGUUCAUAAACGAACAAAACUCCAUAUAUAUAAUUUUAAUUAUAUAUAAUUUUAUAUUAUUUAUUAAUAUAAAGAAAGGAAUUAAGACAAAUCAUAAUGAUCCUUAUAAUAUGGGUAAUAGACGUGCUAUAAUAAAAUGAUAAUAAAAUUAUAUAAAAUAUAUUUAAUUAUAUUUAAUUAAUAAUAUAAAACAUUUUAAUUUUUAAUAUAUUUUUUUAUUAUAUAUUAAUAUGAAUUAUAAUCUGAAAUUCGAUUAUAUGAAAAAAGAAUUGCUAGUAAUACGUAAAUUAGUAUGUUACGGUGAAUAUUCUAACUGUUUCGCACUAAUCACUCAUCACGCGUUGAAACAUAUUAUUAUCUUAUUAUUUAUAUAAUAUUUUUUAAUAAAUAUUAAUAAUUAUUAAUUUAUAUUUAUUUAUAUCAGAAAUAAUAUGAAUUAAUGCGAAGUUGAAAUACAGUUACCGUAGGGGAACCUGCGGUGGGCUUAUAAAUAUCUUAAAUAUUCUUACA |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2022-06-08 Deposition Author(s): Burnside, C. , Harper, N. , Klinge, S.