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8D6Z

Crystal structure of sars-cov-2 spike stem fusion peptide in complex with neutralizing antibody cov91-27

PDB DOI: 10.2210/pdb8d6z/pdb

Classification: IMMUNE SYSTEM
Organism(s): Salmonella Enterica , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.)

Deposited: 2022-06-06
Deposition Author(s): Lee, C.C.D. , Lin, T.H. , Wilson, I.A. , Yuan, M.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.3 Å

Literature

Crystal structure of sars-cov-2 spike stem fusion peptide in complex with neutralizing antibody cov91-27

Lee, C.C.D. , Lin, T.H. , Wilson, I.A. , Yuan, M.

Primary Citation of Related Structures: 8D6Z


Proteins
Molecule Chains Sequence Length Organism Sequence
Neutralizing antibody COV91-27 heavy chain A 224 Salmonella Enterica , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) QVQLVESGGGVVHPGGSLRLSCAASGFTFSDFAMNWVRQAPGEGLQWVAIISYDGRNKHFAASVRGRFTISRDNSKNTMFLQMSSLRAEDTAIYYCATLGGWFEEASPTYWGRGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC
Neutralizing antibody COV91-27 heavy chain C 224 Salmonella Enterica , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) QVQLVESGGGVVHPGGSLRLSCAASGFTFSDFAMNWVRQAPGEGLQWVAIISYDGRNKHFAASVRGRFTISRDNSKNTMFLQMSSLRAEDTAIYYCATLGGWFEEASPTYWGRGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC
Neutralizing antibody COV91-27 heavy chain E 224 Salmonella Enterica , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) QVQLVESGGGVVHPGGSLRLSCAASGFTFSDFAMNWVRQAPGEGLQWVAIISYDGRNKHFAASVRGRFTISRDNSKNTMFLQMSSLRAEDTAIYYCATLGGWFEEASPTYWGRGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC
Neutralizing antibody COV91-27 heavy chain G 224 Salmonella Enterica , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) QVQLVESGGGVVHPGGSLRLSCAASGFTFSDFAMNWVRQAPGEGLQWVAIISYDGRNKHFAASVRGRFTISRDNSKNTMFLQMSSLRAEDTAIYYCATLGGWFEEASPTYWGRGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC
Neutralizing antibody COV91-27 light chain B 215 Salmonella Enterica , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) EVVLTQSPAIVSLSPGERATLSCRASQSVGSRLAWHQQKPGLAPRVLIYDASNRATGIPARFSGSGSGTDFTLTISSIEPEDSAVYYCQQRGDWPLITFGQGTRLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
Neutralizing antibody COV91-27 light chain D 215 Salmonella Enterica , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) EVVLTQSPAIVSLSPGERATLSCRASQSVGSRLAWHQQKPGLAPRVLIYDASNRATGIPARFSGSGSGTDFTLTISSIEPEDSAVYYCQQRGDWPLITFGQGTRLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
Neutralizing antibody COV91-27 light chain F 215 Salmonella Enterica , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) EVVLTQSPAIVSLSPGERATLSCRASQSVGSRLAWHQQKPGLAPRVLIYDASNRATGIPARFSGSGSGTDFTLTISSIEPEDSAVYYCQQRGDWPLITFGQGTRLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
Neutralizing antibody COV91-27 light chain I 215 Salmonella Enterica , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) EVVLTQSPAIVSLSPGERATLSCRASQSVGSRLAWHQQKPGLAPRVLIYDASNRATGIPARFSGSGSGTDFTLTISSIEPEDSAVYYCQQRGDWPLITFGQGTRLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
Spike protein S2 fusion peptide H 15 Salmonella Enterica , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) PSKPSKRSFIEDLLF
Spike protein S2 fusion peptide J 15 Salmonella Enterica , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) PSKPSKRSFIEDLLF
Spike protein S2 fusion peptide K 15 Salmonella Enterica , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) PSKPSKRSFIEDLLF
Spike protein S2 fusion peptide L 15 Salmonella Enterica , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) PSKPSKRSFIEDLLF
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2022-06-06
Deposition Author(s): Lee, C.C.D. , Lin, T.H. , Wilson, I.A. , Yuan, M.