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FASTA Sequence PDB Format mmCIF Format
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8D3P

Type i-c cas4-cas1-cas2 complex bound to half-site integration intermediate (hsi)

PDB DOI: 10.2210/pdb8d3p/pdb

Classification: HYDROLASE/DNA
Organism(s): Vibrio Anguillarum , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.)

Deposited: 2022-06-01
Deposition Author(s): Dhingra, Y. , Juneja, P. , Sashital, D.G. , Suresh, S.K.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 4.26 Å

8d3p
Literature

Type i-c cas4-cas1-cas2 complex bound to half-site integration intermediate (hsi)

Dhingra, Y. , Juneja, P. , Sashital, D.G. , Suresh, S.K.

Primary Citation of Related Structures: 8D3P


Proteins
Molecule Chains Sequence Length Organism Sequence
CRISPR-associated endonuclease Cas1 A 347 Vibrio Anguillarum , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) GAGSMKKLLNTLYVTQPDTYLSLDGDNVVLLKEQEKLGRLPLHNLEAIVGFGYTGASPALMGYCAERNISITFLTKNGRFLARVVGESRGNVVLRKTQYRISENDQESTKIARNFITGKVYNSKWMLERMTREHPLRVNVEQFKATSQLLSVMMQEIRNCDSLESLRGWEGQAAINYNKVFDQMILQQKEEFAFHGRSRRPPKDNVNAMLSFAYTLLANDVAAALETVGLDAYVGFMHQDRPGRASLALDLMEELRGLYADRFVLSLINRKEMTADGFYKKENGAVLMTDEARKTFLKAWQTKKQEKITHPYLGEKMSWGLVPYVQALLLARFLRGDLDEYPPFLWK
CRISPR-associated endonuclease Cas1 B 347 Vibrio Anguillarum , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) GAGSMKKLLNTLYVTQPDTYLSLDGDNVVLLKEQEKLGRLPLHNLEAIVGFGYTGASPALMGYCAERNISITFLTKNGRFLARVVGESRGNVVLRKTQYRISENDQESTKIARNFITGKVYNSKWMLERMTREHPLRVNVEQFKATSQLLSVMMQEIRNCDSLESLRGWEGQAAINYNKVFDQMILQQKEEFAFHGRSRRPPKDNVNAMLSFAYTLLANDVAAALETVGLDAYVGFMHQDRPGRASLALDLMEELRGLYADRFVLSLINRKEMTADGFYKKENGAVLMTDEARKTFLKAWQTKKQEKITHPYLGEKMSWGLVPYVQALLLARFLRGDLDEYPPFLWK
CRISPR-associated endonuclease Cas1 C 347 Vibrio Anguillarum , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) GAGSMKKLLNTLYVTQPDTYLSLDGDNVVLLKEQEKLGRLPLHNLEAIVGFGYTGASPALMGYCAERNISITFLTKNGRFLARVVGESRGNVVLRKTQYRISENDQESTKIARNFITGKVYNSKWMLERMTREHPLRVNVEQFKATSQLLSVMMQEIRNCDSLESLRGWEGQAAINYNKVFDQMILQQKEEFAFHGRSRRPPKDNVNAMLSFAYTLLANDVAAALETVGLDAYVGFMHQDRPGRASLALDLMEELRGLYADRFVLSLINRKEMTADGFYKKENGAVLMTDEARKTFLKAWQTKKQEKITHPYLGEKMSWGLVPYVQALLLARFLRGDLDEYPPFLWK
CRISPR-associated endonuclease Cas1 D 347 Vibrio Anguillarum , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) GAGSMKKLLNTLYVTQPDTYLSLDGDNVVLLKEQEKLGRLPLHNLEAIVGFGYTGASPALMGYCAERNISITFLTKNGRFLARVVGESRGNVVLRKTQYRISENDQESTKIARNFITGKVYNSKWMLERMTREHPLRVNVEQFKATSQLLSVMMQEIRNCDSLESLRGWEGQAAINYNKVFDQMILQQKEEFAFHGRSRRPPKDNVNAMLSFAYTLLANDVAAALETVGLDAYVGFMHQDRPGRASLALDLMEELRGLYADRFVLSLINRKEMTADGFYKKENGAVLMTDEARKTFLKAWQTKKQEKITHPYLGEKMSWGLVPYVQALLLARFLRGDLDEYPPFLWK
CRISPR-associated endonuclease Cas2 E 100 Vibrio Anguillarum , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) GAGSMLVLITYDVQTSSMGGTKRLRKVAKACQNYGQRVQNSVFECIVDSTQLTSLKLELTSLIDEEKDSLRIYRLGNNYKTKVEHIGAKPSIDLEDPLIF
CRISPR-associated endonuclease Cas2 F 100 Vibrio Anguillarum , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) GAGSMLVLITYDVQTSSMGGTKRLRKVAKACQNYGQRVQNSVFECIVDSTQLTSLKLELTSLIDEEKDSLRIYRLGNNYKTKVEHIGAKPSIDLEDPLIF
CRISPR-associated exonuclease Cas4 I 218 Vibrio Anguillarum , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) ASNEEDRYLMLSGLQHFQFCKRQWALIHIEQQWEENVRTIEGQHLHKKADQPFMKEKRGSKLTVRAMPIQSKNLQISGICDVVEFVQDSEGIELSGVSGSYKAFPVEYKRGKPKKGDEDIVQLVAQAMCLEEMLVCRIDKGYLFYNEIKHRVEVPITDALRDKVVQMAKEMHHYYENRHTPKVKTGPFCNNCSLQSICLPKLMNKRSVKRYIEGRLSE

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
HSI strand 2- integrated prespacer strand plus repeat g 58 NA GTACTGGTGGTCCTCAGCTACGTTTTTTGTCGCACTCTTCATGGGTGCGTGGATTGAA
HSI strand 2 h 36 NA CGTAGCTGAGGACCACCAGTACTTTTTTGAATTTTT
HSI strand 3 bottom strand leader-repeat k 41 NA TTCAATCCACGCACCCATGAAGAGGCGGACAGCGAAAATCC
HSI strand 4 top leader strand l 11 NA GGATTTTCGCT
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2022-06-01
Deposition Author(s): Dhingra, Y. , Juneja, P. , Sashital, D.G. , Suresh, S.K.