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8D2K

Structure of acidothermus cellulolyticus cas9 ternary complex (cleavage intermediate 2)

PDB DOI: 10.2210/pdb8d2k/pdb

Classification: RNA BINDING PROTEIN/DNA/RNA
Organism(s): Acidothermus Cellulolyticus , Acidothermus Cellulolyticus 11B , Synthetic Construct

Deposited: 2022-05-30
Deposition Author(s): Das, A. , Li, H. , Rai, J.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.43 Å

8d2k
Literature

Structure of acidothermus cellulolyticus cas9 ternary complex (cleavage intermediate 2)

Das, A. , Li, H. , Rai, J.

Primary Citation of Related Structures: 8D2K


Proteins
Molecule Chains Sequence Length Organism Sequence
CRISPR-associated endonuclease, Csn1 family A 1138 Acidothermus Cellulolyticus , Acidothermus Cellulolyticus 11B , Synthetic Construct MGGSEVGTVPVTWRLGVDVGERSIGLAAVSYEEDKPKEILAAVSWIHDGGVGDERSGASRLALRGMARRARRLRRFRRARLRDLDMLLSELGWTPLPDKNVSPVDAWLARKRLAEEYVVDETERRRLLGYAVSHMARHRGWRNPWTTIKDLKNLPQPSDSWERTRESLEARYSVSLEPGTVGQWAGYLLQRAPGIRLNPTQQSAGRRAELSNATAFETRLRQEDVLWELRCIADVQGLPEDVVSNVIDAVFCQKRPSVPAERIGRDPLDPSQLRASRACLEFQEYRIVAAVANLRIRDGSGSRPLSLEERNAVIEALLAQTERSLTWSDIALEILKLPNESDLTSVPEEDGPSSLAYSQFAPFDETSARIAEFIAKNRRKIPTFAQWWQEQDRTSRSDLVAALADNSIAGEEEQELLVHLPDAELEALEGLALPSGRVAYSRLTLSGLTRVMRDDGVDVHNARKTCFGVDDNWRPPLPALHEATGHPVVDRNLAILRKFLSSATMRWGPPQSIVVELARGASESRERQAEEEAARRAHRKANDRIRAELRASGLSDPSPADLVRARLLELYDCHCMYCGAPISWENSELDHIVPRTDGGSNRHENLAITCGACNKEKGRRPFASWAETSNRVQLRDVIDRVQKLKYSGNMYWTRDEFSRYKKSVVARLKRRTSDPEVIQSIESTGYAAVALRDRLLSYGEKNGVAQVAVFRGGVTAEARRWLDISIERLFSRVAIFAQSTSTKRLDRRHHAVDAVVLTTLTPGVAKTLADARSRRVSAEFWRRPSDVNRHSTEEPQSPAYRQWKESCSGLGDLLISTAARDSIAVAAPLRLRPTGALHEETLRAFSEHTVGAAWKGAELRRIVEPEVYAAFLALTDPGGRFLKVSPSEDVLPADENRHIVLSDRVLGPRDRVKLFPDDRGSIRVRGGAAYIASFHHARVFRWGSSHSPSFALLRVSLADLAVAGLLRDGVDVFTAELPPWTPAWRYASIALVKAVESGDAKQVGWLVPGDELDFGPEGVTTAAGDLSMFLKYFPERHWVVTGFEDDKRINLKPAFLSAEQAEVLRTERSDRPDTLTEAGEILAQFFPRCWRATVAKVLCHPGLTVIRRTALGQPRWRRGHLPYSWRPWSADPWSGGTP

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
Single Guide RNA (102-MER) b 106 NA GGUAGGAUGGCAAGAUCCUGGUAUGCUGGGGAGCCUGAAAAGGCUACCUAGCAAGACCCCUUCGUGGGGUCGCAUUCUUCACCCCCUCGCAGCAGCGAGGGGGUUC
DNA target strand (5'-D(*AP*GP*CP*TP*TP*GP*GP*TP*GP*TP*AP*TP*A)-3') x 13 NA AGCTTGGTGTATA
DNA target strand (5'-D(P*CP*CP*AP*GP*GP*AP*TP*CP*TP*TP*GP*CP*CP*AP*TP*CP*CP*TP*AP*CP*CP*TP*CP*T)-3') t 24 NA CCAGGATCTTGCCATCCTACCTCT
DNA non-target strand (5'-D(P*TP*AP*TP*AP*CP*AP*CP*CP*AP*AP*GP*CP*T)-3') d 13 NA TATACACCAAGCT
DNA non-target strand (5'-D(P*AP*GP*A)-3') y 3 NA AGA
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2022-05-30
Deposition Author(s): Das, A. , Li, H. , Rai, J.