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FASTA Sequence PDB Format mmCIF Format
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8CX1

Cryo-em structure of human apobec3g/hiv-1 vif/cbfbeta/elob/eloc dimeric complex in state 1

PDB DOI: 10.2210/pdb8cx1/pdb

Classification: VIRAL PROTEIN/IMMUNE SYSTEM/RNA
Organism(s): Homo Sapiens , Human Immunodeficiency Virus 1 , Spodoptera Frugiperda

Deposited: 2022-05-19
Deposition Author(s): Azumaya, C.M. , Cheng, Y. , Chesarino, N.M. , Echeverria, I. , Emerman, M. , Gross, J.D. , Langley, C. , Li, Y.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.3 Å

Literature

Cryo-em structure of human apobec3g/hiv-1 vif/cbfbeta/elob/eloc dimeric complex in state 1

Azumaya, C.M. , Cheng, Y. , Chesarino, N.M. , Echeverria, I. , Emerman, M. , Gross, J.D. , Langley, C. , Li, Y.

Primary Citation of Related Structures: 8CX1


Proteins
Molecule Chains Sequence Length Organism Sequence
DNA dC->dU-editing enzyme APOBEC-3G A 421 Homo Sapiens , Human Immunodeficiency Virus 1 , Spodoptera Frugiperda MKPHFRNTVERMYRDTFSYNFYNRPILSRRNTVWLCYEVKTKGPSRPPLDAKIFRGQVYSELKYHPEMRFFHWFSKWRKLHRDQEYEVTWYISWSPCTKCTRDMATFLAEDPKVTLTIFVARLYYFWDPDYQEALRSLCQKRDGPRATMKIMNYDEFQHCWSKFVYSQRELFEPWNNLPKYYILLHIMLGEILRHSMDPPTFTFNFNNEPWVRGRHETYLCYEVERMHNDTWVLLNQRRGFLCNQAPHKHGFLEGRHAELCFLDVIPFWKLDLDQDYRVTCFTSWSPCFSCAQEMAKFISKNKHVSLCIFTARIYDDQGRCQEGLRTLAEAGAKISIMTYSEFKHCWDTFVDHQGCPFQPWDGLDEHSQDLSGRLRAILQNQENGSSLEGGGGWSHPQFEKGGGSGGGSGGGSWSHPQFEK
DNA dC->dU-editing enzyme APOBEC-3G F 421 Homo Sapiens , Human Immunodeficiency Virus 1 , Spodoptera Frugiperda MKPHFRNTVERMYRDTFSYNFYNRPILSRRNTVWLCYEVKTKGPSRPPLDAKIFRGQVYSELKYHPEMRFFHWFSKWRKLHRDQEYEVTWYISWSPCTKCTRDMATFLAEDPKVTLTIFVARLYYFWDPDYQEALRSLCQKRDGPRATMKIMNYDEFQHCWSKFVYSQRELFEPWNNLPKYYILLHIMLGEILRHSMDPPTFTFNFNNEPWVRGRHETYLCYEVERMHNDTWVLLNQRRGFLCNQAPHKHGFLEGRHAELCFLDVIPFWKLDLDQDYRVTCFTSWSPCFSCAQEMAKFISKNKHVSLCIFTARIYDDQGRCQEGLRTLAEAGAKISIMTYSEFKHCWDTFVDHQGCPFQPWDGLDEHSQDLSGRLRAILQNQENGSSLEGGGGWSHPQFEKGGGSGGGSGGGSWSHPQFEK
Virion infectivity factor B 192 Homo Sapiens , Human Immunodeficiency Virus 1 , Spodoptera Frugiperda MENRWQVMIVWQVDRMRIRTWKSLVKHHMYVSGKARGWFYRHHYESPHPRISSEVHIPLGDARLVITTYWGLHTGERDWHLGQGVSIEWRKKRYSTQVDPELADQLIHLYYFDCFSDSAIRKALLGHIVSPRCEYQAGHNKVGSLQYLALAALITPKKIKPPLPSVTKLTEDRWNKPQKTKGHRGSHTMNGH
Virion infectivity factor G 192 Homo Sapiens , Human Immunodeficiency Virus 1 , Spodoptera Frugiperda MENRWQVMIVWQVDRMRIRTWKSLVKHHMYVSGKARGWFYRHHYESPHPRISSEVHIPLGDARLVITTYWGLHTGERDWHLGQGVSIEWRKKRYSTQVDPELADQLIHLYYFDCFSDSAIRKALLGHIVSPRCEYQAGHNKVGSLQYLALAALITPKKIKPPLPSVTKLTEDRWNKPQKTKGHRGSHTMNGH
Core-binding factor subunit beta C 182 Homo Sapiens , Human Immunodeficiency Virus 1 , Spodoptera Frugiperda MPRVVPDQRSKFENEEFFRKLSRECEIKYTGFRDRPHEERQARFQNACRDGRSEIAFVATGTNLSLQFFPASWQGEQRQTPSREYVDLEREAGKVYLKAPMILNGVCVIWKGWIDLQRLDGMGCLEFDEERAQQEDALAQQAFEEARRRTREFEDRDRSHREEMEVRVSQLLAVTGKKTTRP
Core-binding factor subunit beta H 182 Homo Sapiens , Human Immunodeficiency Virus 1 , Spodoptera Frugiperda MPRVVPDQRSKFENEEFFRKLSRECEIKYTGFRDRPHEERQARFQNACRDGRSEIAFVATGTNLSLQFFPASWQGEQRQTPSREYVDLEREAGKVYLKAPMILNGVCVIWKGWIDLQRLDGMGCLEFDEERAQQEDALAQQAFEEARRRTREFEDRDRSHREEMEVRVSQLLAVTGKKTTRP
Elongin-B D 118 Homo Sapiens , Human Immunodeficiency Virus 1 , Spodoptera Frugiperda MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFRADDTFEALCIEPFSSPPELPDVMKPQDSGSSANEQAVQ
Elongin-B I 118 Homo Sapiens , Human Immunodeficiency Virus 1 , Spodoptera Frugiperda MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFRADDTFEALCIEPFSSPPELPDVMKPQDSGSSANEQAVQ
Elongin-C E 112 Homo Sapiens , Human Immunodeficiency Virus 1 , Spodoptera Frugiperda MDGEEKTYGGCEGPDAMYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC
Elongin-C J 112 Homo Sapiens , Human Immunodeficiency Virus 1 , Spodoptera Frugiperda MDGEEKTYGGCEGPDAMYVKLISSDGHEFIVKREHALTSGTIKAMLSGPGQFAENETNEVNFREIPSHVLSKVCMYFTYKVRYTNSSTEIPEFPIAPEIALELLMAANFLDC

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
RNA (5'-R(P*UP*AP*AP*AP*UP*AP*UP*U)-3') k 8 NA UAAAUAUU
RNA (5'-R(P*AP*AP*AP*AP*UP*AP*UP*U)-3') l 8 NA AAAAUAUU
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2022-05-19
Deposition Author(s): Azumaya, C.M. , Cheng, Y. , Chesarino, N.M. , Echeverria, I. , Emerman, M. , Gross, J.D. , Langley, C. , Li, Y.