8CWO
Cutibacterium acnes 30s ribosomal subunit with sarecycline bound, body domain only in the local refined map
PDB DOI: 10.2210/pdb8cwo/pdb
Classification: ANTIBIOTIC Organism(s): Cutibacterium Acnes , Synthetic Construct
Deposited: 2022-05-19 Deposition Author(s): Bunick, C.G. , Devarkar, S.C. , Lomakin, I.B.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 2.84 Å
Cutibacterium acnes 30s ribosomal subunit with sarecycline bound, body domain only in the local refined map
Bunick, C.G. , Devarkar, S.C. , Lomakin, I.B.
Primary Citation of Related Structures: 8CWO
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| 16S ribosomal RNA | a | 1537 | NA | UUUUUCAUUGGAGAGUUUGAUCCUGGCUCAGGACGAACGCUGGCGGCGUGCUUAACACAUGCAAGUCGAACGGAAAGGCCCUGCUUUUGUGGGGUGCUCGAGUGGCGAACGGGUGAGUAACACGUGAGUAACCUGCCCUUGACUUUGGGAUAACUUCAGGAAACUGGGGCUAAUACCGGAUAGGAGCUCCUGCUGCAUGGUGGGGGUUGGAAAGUUUCGGCGGUUGGGGAUGGACUCGCGGCUUAUCAGCUUGUUGGUGGGGUAGUGGCUUACCAAGGCUUUGACGGGUAGCCGGCCUGAGAGGGUGACCGGCCACAUUGGGACUGAGAUACGGCCCAGACUCCUACGGGAGGCAGCAGUGGGGAAUAUUGCACAAUGGGCGGAAGCCUGAUGCAGCAACGCCGCGUGCGGGAUGACGGCCUUCGGGUUGUAAACCGCUUUCGCCUGUGACGAAGCGUGAGUGACGGUAAUGGGUAAAGAAGCACCGGCUAACUACGUGCCAGCAGCCGCGGUGAUACGUAGGGUGCGAGCGUUGUCCGGAUUUAUUGGGCGUAAAGGGCUCGUAGGUGGUUGAUCGCGUCGGAAGUGUAAUCUUGGGGCUUAACCCUGAGCGUGCUUUCGAUACGGGUUGACUUGAGGAAGGUAGGGGAGAAUGGAAUUCCUGGUGGAGCGGUGGAAUGCGCAGAUAUCAGGAGGAACACCAGUGGCGAAGGCGGUUCUCUGGGCCUUUCCUGACGCUGAGGAGCGAAAGCGUGGGGAGCGAACAGGCUUAGAUACCCUGGUAGUCCACGCUGUAAACGGUGGGUACUAGGUGUGGGGUCCAUUCCACGGGUUCCGUGCCGUAGCUAACGCUUUAAGUACCCCGCCUGGGGAGUACGGCCGCAAGGCUAAAACUCAAAGGAAUUGACGGGGCCCCGCACAAGCGGCGGAGCAUGCGGAUUAAUUCGAUGCAACGCGUAGAACCUUACCUGGGUUUGACAUGGAUCGGGAGUGCUCAGAGAUGGGUGUGCCUCUUUUGGGGUCGGUUCACAGGUGGUGCAUGGCUGUCGUCAGCUCGUGUCGUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCUUGUUCACUGUUGCCAGCACGUUAUGGUGGGGACUCAGUGGAGACCGCCGGGGUCAACUCGGAGGAAGGUGGGGAUGACGUCAAGUCAUCAUGCCCCUUAUGUCCAGGGCUUCACGCAUGCUACAAUGGCUGGUACAGAGAGUGGCGAGCCUGUGAGGGUGAGCGAAUCUCGGAAAGCCGGUCUCAGUUCGGAUUGGGGUCUGCAACUCGACCUCAUGAAGUCGGAGUCGCUAGUAAUCGCAGAUCAGCAACGCUGCGGUGAAUACGUUCCCGGGGCUUGUACACACCGCCCGUCAAGUCAUGAAAGUUGGUAACACCCGAAGCCGGUGGCCUAACCGUUGUGGGGGAGCCGUCGAAGGUGGGACUGGUGAUUAGGACUAAGUCGUAACAAGGUAGCCGUACCGGAAGGUGCGGCUGGAUCACCUCCUUUCUAAGGAG |
| mRNA | y | 22 | NA | CAAGGAGGUAAAAAUGUUUUAA |
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| 30S ribosomal protein S18 | R | 79 | Cutibacterium Acnes , Synthetic Construct | MAGPQRKSVNKKKVVPIKTVHIGAVDYKDTALLRKFISERGKIRARRVTGLSVQDQRKVAIAIKNARELALLPYASTAR |
| 30S ribosomal protein S20 | T | 88 | Cutibacterium Acnes , Synthetic Construct | MPNIKSQIKRVKTNEKSRQRNKAVKSALRTYVRNFRRAAEAGDVEAATKAARVANRQLDKAASKGVIHKNQAANRKSAISKKLNSLAA |
| 30S ribosomal protein S16 | P | 147 | Cutibacterium Acnes , Synthetic Construct | MATKIRLKRLGKIRTPHYRVVVMDSRAKRDGRAIEEIGQYHPKADPSVIVIDSERVQYWLGVGAQPTEAVVALLKRTGDWQKFTGDTSPSGVKPQPERPNKDDLFNAALAEADEAPREAITKKSEGAAADEASESAAGDNSGEKAEA |
| 30S ribosomal protein bS22 | X | 33 | Cutibacterium Acnes , Synthetic Construct | MGSVIKKRRKRMAKKKHRKLLKRTRIQRRRAGK |
| 30S ribosomal protein S2 | B | 283 | Cutibacterium Acnes , Synthetic Construct | MAVVTTRQLLESGVHFGHQTRRWNPKMKRFIFTERNGIYIIDLHQSLTYIDKAYAFVKETVAKGGQILFVGTKKQAQESIVEQATRVGMPYVNQRWLGGMLTNFQTISKRIARLKELEAMDFDKVSGSGLTKKELLMLSREKDKLEKDLGGIRDMPKVPQAVWVVDTKKEHLAIDEARKLKIPVVAILDTNCDPDEVDYAIPGNDDAIRSVSLLTRIIADAAAEGLMARSAGKSGEQPAEAEPMPDWERELLEGDGAKTEAKAEEPKAEAKKADEAPEAEKSN |
| 30S ribosomal protein S4 | D | 201 | Cutibacterium Acnes , Synthetic Construct | MARYTGPLTKKSRRLGTDLVGNDKSFERRPYPPGVHGRGRTKDSEYSLQLREKQKARYAYGVLEKQFRRYYEEADRAQGKTGDVLLQILESRLDNVVYRAGLAATRRQARQMVSHGHFLVNGKKVNIPSYRVSTHDIIDVREKSKDLPPIVIARETFETRDVPAWLEVRPNKGRILVHQLPTRDQIVIDVNEQAIVELYSK |
| 30S ribosomal protein S5 | E | 215 | Cutibacterium Acnes , Synthetic Construct | MSGTQRRGGGAGGERRGRDNRRGQNDRNRNQNEYLERVVAINRVAKVVQGGRRFSFTALVVVGDGEGSVGVGYGKAKEVPAAIAKAVEEAKKHFFKVPLVGRTITHPVIGEKAAGVVMLRPASPGTGVIAGGSARAVLECAGVHDVLAKSLGSSNAINVVHATVDALQQLEEPEEVARRRGKSVEDIAPAAMLRARKEADEAAAAARMEEKAGVN |
| 30S ribosomal protein S6 | F | 96 | Cutibacterium Acnes , Synthetic Construct | MRKYEVMIIIDPTVEERQVDSLMEKYLKVITDEKGTVDNVDVWGKRRLAYDIQKKSEGIYVVVNATCEPATIQELDRLLAIDEKIMRTKVMRPEIH |
| 30S ribosomal protein S8 | H | 135 | Cutibacterium Acnes , Synthetic Construct | MTMTDPIADMLTRLRNANQAYHDQTSMPHSKIKAGIAGILKSEGYIADYKVNEPKEGEVGKTLTLTLKYGENRERSIAGVRRISKPGLRVYAKSTALPKVLGGLGIAIISTSQGLLTDKQAHEKSVGGEVLAYVW |
| 30S ribosomal protein S11 | K | 135 | Cutibacterium Acnes , Synthetic Construct | MATAGHKGAPKTKVRRKEKKNVVAGQAHIKSTFNNTIIAITDPSGAVISWASAGTVGFKGSRKSTPFAAQMAAEAAGRRAMEHGMKRVDVFVKGPGSGRETAIRSLGAVGLEIGPISDVTPVPHNGCRPPKRRRV |
| 30S ribosomal protein S12 | L | 123 | Cutibacterium Acnes , Synthetic Construct | MPTIQQLVRKGRTDKISKNKTPALKGSPQRRGVCTRVYTTTPKKPNSALRKVARVRLSSGIEVTAYIPGVGHNLQEHSMVLVRGGRVKDLPGVRYKIVRGSLDTQGVKGRKQARSRYGAKKEK |
| 30S ribosomal protein S15 | O | 87 | Cutibacterium Acnes , Synthetic Construct | MDAAEKKKIIEEYATHPGDTGSPDVQVAILTKRIAELTEHLKVHKGDHHSRRGLMLMVGQRRRLLNYIAKNDIEHYRELIARLGLRR |
| 30S ribosomal protein S17 | Q | 90 | Cutibacterium Acnes , Synthetic Construct | MSENTAERTTRRKVREGLVVSDKMNKTITVMVEDRVKHPLYGKVMTKSVRLKAHDENNEAGMGDRVRIMETRPLSATKRWRLVEIIEKAK |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2022-05-19 Deposition Author(s): Bunick, C.G. , Devarkar, S.C. , Lomakin, I.B.