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FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

8CRX

Cutibacterium acnes 70s ribosome with mrna, p-site trna and sarecycline bound

PDB DOI: 10.2210/pdb8crx/pdb

Classification: ANTIBIOTIC
Organism(s): Cutibacterium Acnes , Escherichia Coli , Synthetic Construct

Deposited: 2022-05-12
Deposition Author(s): Bunick, C.G. , Devarkar, S.C. , Lomakin, I.B.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.78 Å

Literature

Cutibacterium acnes 70s ribosome with mrna, p-site trna and sarecycline bound

Bunick, C.G. , Devarkar, S.C. , Lomakin, I.B.

Primary Citation of Related Structures: 8CRX


Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
23S ribosomal RNA a 3086 NA GCAAAGUUGUGUAGUGCGAUCGGUGGAUGCCUUGGCACCAAGAGCCGAUGAAGGACGUUGUGACCUGCGAUAAGCCCUGGGGAGUUGGUGAGCGAGCUGUGAUCCGGGGGUGUCCGAAUGGGGAAACCUGGAAUGUCCGGAGUAGUGUCCGGUGGCCCUGCCCUGAAUGUAUAGGGGUGUGGGUGGUAACGCGGGGAAGUGAAACAUCUUAGUACCCGUAGGAAGAGAAAACAAGUGUGAUUCCGUGAGUAGUGGCGAGCGAAAGCGGAGGAGGCUAAACCGUGUGUGUGUUCAAGCCGGCAGGUGUUGCAUGUGCGGGGUUGUGGGGGCCUUGUGGUUCUGCUGCCGCAGGAUUGGCCAGUGAGAAAUGUUGCGUGAAGGUGAAGCGUCUGGGAAGGCGUACCGGAGUGGGUGAGAGUCCUGUAACUGUAAGCGUGGCACUGGUGUGGGGUUGCCCCGAGUAGCGUGGGACUCGUGGAAUUUCGCGUGAAUCUGGCGGGACCACCCGUCAAGCCUAAAUACUCCUUGGUGACCGAUAGUGGAUGAGUACCGUGAGGGAAGGGUGAAAAGUACCCCGGGAGGGGAGUGAAAGAGUUCCUGAAACCGGUCGCAUGCAAGCCGUCAGAGCCUGUGUGGUGAUGGCGUGCCUUUUGAAGAAUGAGCCUGCGAGUUAGUGAUGCGUGGCGAGGUUAACCCGUGGUGGGGGAGUCGUAGCGAAAGCGAGUCCGAUAAGGGCGUGAGUCGCGUGUUCUAGACCCGAAGCGGUGUGAUCUAUCCAUGGCCAGGAUGAAGCGUCGGUAAGACGUCGUGGAGGUCCGAACCCACUUCAGUUGAAAAUGGAGGGGAUGAGUUGUGGAUAGGGGUGAAAGGCCAAUCAAACACCGUGAUAGCUGGUUCUCCCCGAAAUGCAUUUAGGUGCAGCGUUGCGUGGUUCUUGUUGGAGGUAGAGCACUGGAUGGUCUAGGGGGCUUAUCGGCUUACCGAAAUCAGCCAAACUCCGAAUGCUGGCAAGUGUAGCGUGGCAGUGAGACGGCGGGUGAUAAGCUUCGUCGUCGAGAGGGAAACAGCCCAGAUCAUCAGCUAAGGCCCCUAAGUGGUGACUCAGUGGGAAAGGAUGUGGAGUUGCGUAGACAACCAGGAGGUUGGCUUGGAAGCAGCCAUCCUUGAAAGAGUGCGUAAUAGCUCACUGGUCAAGUGAUUCCGCGCCGAUAAUGUAGCGGGGCUUAAGUUAUCCGCCGAAGCUGUGGCAACCUGUGUGGUUGGGUAGGGGAGCGUCGUGUCAGUGGUGAAGCUGCCGGGUGACUGUGUGGUGGAGUUGAUGCGAGUGAGAAUGCAGGCAUGAGUAGCGUGUGACGGGUGGGAAUCCCGUCCGCCGAUUAUCCAAGGGUUCCAGGGUCAAGUUUGUCUGCCCUGGGUGAGUCGGGUCCUAAGGCGAGGCCGACAGGCGUAGUCGAUGGGUAACCAGUUGAUAUUCUGGUACCGGCUUGUCACCGUCCGUGUCGAGGUGUGUGAUGCUAAGCAUGUGAGCUUGUCUUGGGAGUGUUUUUGAUGCUUCUGGGGUGGGUGAGUGUGUGAACCGAUCAUGUAGUAGGCAAGCUGCGGAGGGACGCAGUGAGGUAGCUCAUCCCCGGUGAUGGUUGUCCGGGGCUAAGUGUGUGGACUGUCUGGUAGGUAAAUCCGCUGGGCGUGAAGGUUGAGGCAUGAUGGGGAGCCCAUGGUUGUGGGUGAGUGAGUGAUCCUGUACUGUCGAGAAAAGCUUCGUGAGCGAGGUGGCGGGUCCGCCCGUACCCUAAACCGACACUGGUGGAUAGGUAGAGUAUACCGAGGCGAUCGAGUGAAUCGUGGUGAAGGAACUCGGCAAAAUGCCCCCGUAACUUUGGGAUAAGGGGGACCUGAGCUGUCGUGCACCCGUGCGGUGUGGUGGCGGUGAGGGGCGCAGAGUCCAGGGGGAAACGACUGUUUACCAAAAACACAGGUCCGUGCGAAGUCGUAAGACGAUGUAUACGGACUGACUCCUGCCCGGUGCUGGAAGGUUAAGGGGAACUGUGAGUGUAUGCGUAGCGGUGAACUUAAGCCCCAGUAAACGGCGGUGGUAACXAUAACCAUCCUAAGGUAGCGAAAUUCCUUGUCGGGUAAGUUCCGACCUGCACGAAUGGAGUAACGAUUUCCCUACUGUCUCCACCAUGAACUCGGUGAAAUUGCAUUACGAGUAAAGAUGCUCGUUACGCGCAGCAGGACGGAAAGACCCCGGGACCUUUACUAUAGUUUGGUAUUGGUGAUUGGGACGGUUUGUGUAGGAUAGGUGGGAGACGUUGAUGCGGCCACGCUAGUGGUGGUGGAGUCGUUGGUGAAAUACCACUCUGAUUGUUCUGGUUAUCUCACUGUGGACCGUGAUCCGGUUCAAGGACAGUGCCUGAUGGGUAGUUUGACUGGGGCGGUCGCCUCCUAAAGGGUAACGGAGGCGCCCAAAGGUUCCCUCAGCCUGGUUGGUAAUCAGGUGGUGAGUGUAAGUGCACAAGGGGGCUUGACUGUGAGACUGACAGGUCGAGCAGGGACGAAAGUCGGGACUAGUGAUCUGACGGUGGCUUGUGGAUGCGCCGUCACUCAACGGAUAAAAGGUACCCCGGGGAUAACAGGCUGAUCUUGCCCGAGCGCUCAUAGCGACGGCAUGGUUUGGCACCUCGAUGUCGGCUCGUCGCAUCCUGGGGCUGGAGUCGGUCCCAAGGGUUGGGCUGUUCGCCCAUUAAAGCGGCACGCGAGCUGGGUUCAGAACGUCGUGAGACAGUUCGGUCCCUAUCCGCUGCGCGCGGAGGAAUCUUGAGAAGGGCUGUCUUUAGUACGAGAGGACCGAGACGGACUGACCUCUGGUGUGCCAGUUGUUCUGCCAAGAGCAUGGCUGGUUGGCUACGUCGGGUUGUGAUAACCGCUGAAAGCAUCUAAGCGGGAAGCACGCUUCAAGAUAAGGGUUCCCACAGGAGUGUUCCUGGUAAGGUCCCCGAGAGAUGAUCGGGUUGAUAGGCCAGACGUGGACGCAUCGUAAGGUGUGGAGCUGACUGGUACUAAUAGACCGAGGACUUUCAUUAACA
5S ribosomal RNA b 120 NA UUUCCGGUGGCCAUAGUGGAAGGGAAACACCCGGUCCCAUUCCGAACCCGGUCGUUAAGCCUUCCAACGCUGAUGGUACUGCACGAGGGAUCGUGUGGGAGAGUAAGACGCUGCCGGAAU
P-site initiator tRNA c 77 NA CGCGGGGUGGAGCAGCCUGGUAGCUCGUCGGGCUCAUAACCCGAAGGUCGUCGGUUCAAAUCCGGCCCCCGCAACCA
32MF mRNA y 22 NA CAAGGAGGUAAAAAUGUUUUAA

Proteins
Molecule Chains Sequence Length Organism Sequence
50S ribosomal protein L22 R 153 Cutibacterium Acnes , Escherichia Coli , Synthetic Construct MSKTERPSRRAALLGDRPGSYAIARHVRMSASKCRRVINLVRGMDAVDAVTMLKFQPQAAAEPIRKVIASAMANAEQTEGLRADDLYISQAFVDEGITMRRIRPRAKGSASRILKRSAHITVVVEPKEARQARKKAKSGRPAAAAKSETEKGA
50S ribosomal protein L24 T 122 Cutibacterium Acnes , Escherichia Coli , Synthetic Construct MKSLKIKKGDRVKVIAGNDKGAIGEVLSVDPARERVVVEGVNIRKHHRRDMPTPQGGTTKGGIISSEAPIHVSNVQLVTKIDGKDVVTRVGYRRVDVTKRRPDGSEYAAQRSVRYLKKEEAK
50S ribosomal protein L20 P 123 Cutibacterium Acnes , Escherichia Coli , Synthetic Construct MARVKRSVNAKKKRREVLDQASGYRGQRSRLYRKAKEQTLHSATYSFRDRRAKKGDFRSLWIQRINAASRAQGMTYNRFINGLKNAGVEVDRKMLAELAVSDINAFNSLVEVAKASQPQNAAA
50S ribosomal protein L29 X 77 Cutibacterium Acnes , Escherichia Coli , Synthetic Construct MPKLSAAELRQLSGEELRNKVRELKEELFGLRFQSATGQLENTARLREVRKDIARVYTVLQERNLNIVDDPDSTKEA
50S ribosomal protein L6 G 180 Cutibacterium Acnes , Escherichia Coli , Synthetic Construct MSRIGRLPIAVPSGVEVKLDGQYVEVKGPKGTLNFTVREPITVSKNDEGAILVERPDDERENRSLHGLTRTLINNMVIGVTEGYEKKLEIQGVGYRVLSKGPKQLEFNLGFSHPVIVDAPEGITFAVENPTKFSVQGIDKQVVGETAANIRKIRKPEPYKGKGVRYEGENVRRKVGKAGK
50S ribosomal protein L13 I 147 Cutibacterium Acnes , Escherichia Coli , Synthetic Construct MTTYSPKAGEVQRKWYVIDAEDIVLGRLATTAANLLRGKHKPQYAPHIDTGDFVVVVNASKIALTGKKATDSLRYDHSGRPGGLRVTSIGEMLAKNPRRAVERAVWGMMPKNKLSRQQLKKLKVYGGPEHPHAAQNPQPYEITQIAQ
50S ribosomal protein L14 J 122 Cutibacterium Acnes , Escherichia Coli , Synthetic Construct MIQQETRLKVADNTGAKELLCIRVLGGSKRRYAYLGDTIVCTVKDAIPGGNVKKGEVVKAVVVRTVKSHRRPDGSYIKFDENAAVLLKGDGEPRGTRIFGPIARELREKKFMRIVSLAPEVI
50S ribosomal protein L17 M 187 Cutibacterium Acnes , Escherichia Coli , Synthetic Construct MPKPTKGPRLGGSPAHERIILRNLASQLFEHGRVVTTVTKAKRVRPLAEKLINRAKTDTVANRRFVNRTITDRGIVHILFTEIGPRMEGRDGGYTRVTRIGIRKGDNAPMAVIEVISDKVAPKAPASAADAKAQINTATEAKDAEPEAGDAAVEHNAPAEDAAAQAPVADEQEAAEADEKAEEKPEA
50S ribosomal protein L18 N 127 Cutibacterium Acnes , Escherichia Coli , Synthetic Construct MASTLTVRKSLSDRAKARARRQARGRKKIFGTVERPRMVVTRSSKHVFVQVIDDVAGNTLVSASTMEAELREMSGDKTAKAARVGTIIGERAKAAGITKVVFDKAGNQYHGRIAALADAAREAGLDF
50S ribosomal protein L23 S 102 Cutibacterium Acnes , Escherichia Coli , Synthetic Construct MSELKIRDPRDIILAPVVSEKSYGLLDQNTYTFVVKPTANKTEIKIAIEQIFGVKVTSVNTMNRKGKVRRTRTGVGKRPDTKRAIVTVAEGDRIDIFTGPVA
50S ribosomal protein L3 D 223 Cutibacterium Acnes , Escherichia Coli , Synthetic Construct MTNERTVKGVLGTKLGMTQLWDEHNRLVPVTVIQAGPCVVTQVRTPETDGYSAVQLGYGAVKAKNVTKPEAGHFEKAGVTPRRHLVELRTADASEYTLGQEIAADVFSESDFVDVTGTSKGKGTAGVMKRHGFGGLRATHGVHRKHRSPGSIGGCSTPGKVIKGLRMAGRMGVERVTVQNLQVHSVDAERGIMLVRGAVPGPKGSLLVVRSAAKKAAKNGDAA
50S ribosomal protein L25 U 205 Cutibacterium Acnes , Escherichia Coli , Synthetic Construct MADIIHLKAEQRTEFGKGAARRIRRDDKVPAVMYGHDHDPIHVTLDGHATLLALRTENPLLSIEIEGQKPMLALPKDVQRDVLKGFVRHVDLLTVRRGEKVDVNVALRITGESAPGTIAMTEFNEIEVQADLLNIPEVIEIDVTGLEAGTTIYLGDLKLPEGTSLLGDAEDVAATVAFPETEPVEDEESAGEDAQGESEEKAAKE
30S ribosomal protein S5 E 215 Cutibacterium Acnes , Escherichia Coli , Synthetic Construct MSGTQRRGGGAGGERRGRDNRRGQNDRNRNQNEYLERVVAINRVAKVVQGGRRFSFTALVVVGDGEGSVGVGYGKAKEVPAAIAKAVEEAKKHFFKVPLVGRTITHPVIGEKAAGVVMLRPASPGTGVIAGGSARAVLECAGVHDVLAKSLGSSNAINVVHATVDALQQLEEPEEVARRRGKSVEDIAPAAMLRARKEADEAAAAARMEEKAGVN
30S ribosomal protein S6 F 96 Cutibacterium Acnes , Escherichia Coli , Synthetic Construct MRKYEVMIIIDPTVEERQVDSLMEKYLKVITDEKGTVDNVDVWGKRRLAYDIQKKSEGIYVVVNATCEPATIQELDRLLAIDEKIMRTKVMRPEIH
30S ribosomal protein S11 K 135 Cutibacterium Acnes , Escherichia Coli , Synthetic Construct MATAGHKGAPKTKVRRKEKKNVVAGQAHIKSTFNNTIIAITDPSGAVISWASAGTVGFKGSRKSTPFAAQMAAEAAGRRAMEHGMKRVDVFVKGPGSGRETAIRSLGAVGLEIGPISDVTPVPHNGCRPPKRRRV
30S ribosomal protein S12 L 123 Cutibacterium Acnes , Escherichia Coli , Synthetic Construct MPTIQQLVRKGRTDKISKNKTPALKGSPQRRGVCTRVYTTTPKKPNSALRKVARVRLSSGIEVTAYIPGVGHNLQEHSMVLVRGGRVKDLPGVRYKIVRGSLDTQGVKGRKQARSRYGAKKEK
30S ribosomal protein S15 O 87 Cutibacterium Acnes , Escherichia Coli , Synthetic Construct MDAAEKKKIIEEYATHPGDTGSPDVQVAILTKRIAELTEHLKVHKGDHHSRRGLMLMVGQRRRLLNYIAKNDIEHYRELIARLGLRR
30S ribosomal protein S17 Q 90 Cutibacterium Acnes , Escherichia Coli , Synthetic Construct MSENTAERTTRRKVREGLVVSDKMNKTITVMVEDRVKHPLYGKVMTKSVRLKAHDENNEAGMGDRVRIMETRPLSATKRWRLVEIIEKAK
50S ribosomal protein bL37 V 24 Cutibacterium Acnes , Escherichia Coli , Synthetic Construct MGKTGRKRRARRKKGANHGKRPNA
50S ribosomal protein L28 W 61 Cutibacterium Acnes , Escherichia Coli , Synthetic Construct MAAVCDICAKRPGFGHNVPWSKKKTNRRWSPNIQRVRVVENGTHKRMNVCTSCLKAGRVSR
50S ribosomal protein L32 Z 63 Cutibacterium Acnes , Escherichia Coli , Synthetic Construct MAVPKRKMSRSNTRHRRSQWKTVATKLVTCANPACGEKHLPHTACPSCGGYGPRGDRRQVVEA
50S ribosomal protein L33 0 56 Cutibacterium Acnes , Escherichia Coli , Synthetic Construct MAKKSGDVRPKITLACTECKERNYITKKNRRNNPDRMEMAKFCPRCRKHTAHRETR
50S ribosomal protein L34 1 44 Cutibacterium Acnes , Escherichia Coli , Synthetic Construct MKRTFQPSNRRRARNHGFRSRMSTRAGRSILAARRRKGRVNLSA
50S ribosomal protein L35 2 68 Cutibacterium Acnes , Escherichia Coli , Synthetic Construct MPKMKSHSGTKKRFKVTGSGKVTARKAGKRHLNEHKSSRVTRRLTGETVLSKGEAAKVKKLLAGHPGR
50S ribosomal protein L31 4 69 Cutibacterium Acnes , Escherichia Coli , Synthetic Construct MKQGIHPDYRETTVVCTCGNTFTTRSTSQSGTLNADVCSKCHPFYTGKQKILDAGGRVARFERRYGKKN
30S ribosomal protein S8 H 135 Cutibacterium Acnes , Escherichia Coli , Synthetic Construct MTMTDPIADMLTRLRNANQAYHDQTSMPHSKIKAGIAGILKSEGYIADYKVNEPKEGEVGKTLTLTLKYGENRERSIAGVRRISKPGLRVYAKSTALPKVLGGLGIAIISTSQGLLTDKQAHEKSVGGEVLAYVW
50S ribosomal protein L36 3 37 Cutibacterium Acnes , Escherichia Coli , Synthetic Construct MKVQPSVKKICDKCKVIRRHGRVMVICDNPRHKQRQG
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2022-05-12
Deposition Author(s): Bunick, C.G. , Devarkar, S.C. , Lomakin, I.B.