8CMH
Human leukocyte antigen class ii allotype dr1 presenting sars-cov-2 omicron (ba.1) spike peptide s486-505
PDB DOI: 10.2210/pdb8cmh/pdb
Classification: IMMUNE SYSTEM Organism(s): Salmonella Enterica , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.)
Deposited: 2023-02-19 Deposition Author(s): Godkin, A.J. , Maclachlan, B.J. , Mason, G.H. , Rizkallah, P.J. , Sourfield, D.O.
Experimental Data Snapshot
Method: X-RAY DIFFRACTION Resolution: 1.64 Å
Human leukocyte antigen class ii allotype dr1 presenting sars-cov-2 omicron (ba.1) spike peptide s486-505
Godkin, A.J. , Maclachlan, B.J. , Mason, G.H. , Rizkallah, P.J. , Sourfield, D.O.
Primary Citation of Related Structures: 8CMH
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| HLA class II histocompatibility antigen, DR alpha chain | A | 183 | Salmonella Enterica , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) | MIKEEHVIIQAEFYLNPDQSGEFMFDFDGDEIFHVDMAKKETVWRLEEFGRFASFEAQGALANIAVDKANLEIMTKRSNYTPITNVPPEVTVLTNSPVELREPNVLICFIDKFTPPVVNVTWLRNGKPVTTGVSETVFLPREDHLFRKFHYLPFLPSTEDVYDCRVEHWGLDEPLLKHWEFDA |
| Human leukocyte antigen DR beta chain allotype DR1 (DRB1*0101) | B | 194 | Salmonella Enterica , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) | MGSMGDTRPRFLWQLKFECHFFNGTERVRLLERCIYNQEESVRFDSDVGEYRAVTELGRPDAEYWNSQKDLLEQRRAAVDTYCRHNYGVGESFTVQRRVEPKVTVYPSKTQPLQHHNLLVCSVSGFYPGSIEVRWFRNGQEEKAGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSVTSPLTVEWRA |
| Spike protein S2' | C | 20 | Salmonella Enterica , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) | FNCYFPLRSYSFRPTYGVGH |
Experimental Data
Method: X-RAY DIFFRACTION
Deposited Date: 2023-02-19 Deposition Author(s): Godkin, A.J. , Maclachlan, B.J. , Mason, G.H. , Rizkallah, P.J. , Sourfield, D.O.