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FASTA Sequence PDB Format mmCIF Format
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8CII

Delta-rbd complex with ba.2-07 fab, sars1-34 fab and c1 nanobody

PDB DOI: 10.2210/pdb8cii/pdb

Classification: VIRUS
Organism(s): Homo Sapiens , Lama Glama

Deposited: 2023-02-09
Deposition Author(s): Duyvesteyn, H.M.E. , Fry, E.E. , Ren, J. , Stuart, D.I.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.7 Å

8cii
Literature

Delta-rbd complex with ba.2-07 fab, sars1-34 fab and c1 nanobody

Duyvesteyn, H.M.E. , Fry, E.E. , Ren, J. , Stuart, D.I.

Primary Citation of Related Structures: 8CII


Proteins
Molecule Chains Sequence Length Organism Sequence
Spike protein S2' E 202 Homo Sapiens , Lama Glama HHHHHHTNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYRYRLFRKSNLKPFERDISTEIYQAGSKPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGKK
SARS1-34 fab Heavy Chain H 227 Homo Sapiens , Lama Glama QVQLVESGPGLVKPSETLSLTCTVSGDSVTSYHWSWIRQPPGKGLEWIGYIYYSGFTTYNPSLKSRVTMSLDTSKNQFSLRLSSVTAADTAVYYCVRLLSGSLYWNHWFDPWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDK
SARS1-34 fab Light Chain L 214 Homo Sapiens , Lama Glama AIQLTQSPSTLSASVGDRVTITCRASQSIDNWLAWYQQKPGKAPKLLIYDGSSLQSGVPSRFSGSGSGTEFTLTISSLQPDDFATYYCQQYNSLFLTFGGGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
BA.2-07 fab Heavy Chain A 231 Homo Sapiens , Lama Glama EVQLVQSGAEVKEPGSSVKVSCKASGGSFSTSGISWVRQAPGQGLEWMGVIIPIQGTGNYAQKFQGRVTITADESTTTVYMELSSLRSDDTALYYCARDQHIYDSSGHGGLWFDPWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDK
BA.2-07 fab Light Chain B 214 Homo Sapiens , Lama Glama AIRMTQSPSSLSASVGDRVTITCRASQSISSYLNWYQQKPGKAPKVLIYGASSLHSGVPSRFSGSGSGTDFTLTISRLQPEDFATYYCQQSHSSPRSFGGGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
C1 nanobody C 131 Homo Sapiens , Lama Glama QVQLVESGGGLVQPGGSLRLSCAASGFTNDFYSIAWFRQAPGKEREGVSWLSVSDNTPTYVDSVKDRFTISRHNANNTVYLQMNMLKPEDTAIYYCAAGRFAGRDTWPSSYDYWGQGTQVTVSSKHHHHHH
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2023-02-09
Deposition Author(s): Duyvesteyn, H.M.E. , Fry, E.E. , Ren, J. , Stuart, D.I.