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8C41

High resolution structure of the streptococcus pneumoniae topoisomerase iv-dna complex with the novel fluoroquinolone delafloxacin

PDB DOI: 10.2210/pdb8c41/pdb

Classification: ISOMERASE
Organism(s): Streptococcus Pneumoniae , Synthetic Construct

Deposited: 2022-12-30
Deposition Author(s): Chayen, N.E. , Fisher, L.M. , Najmudin, S. , Pan, X.S. , Sanderson, M.R. , Wang, B.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.393 Å

8c41
Literature

High resolution structure of the streptococcus pneumoniae topoisomerase iv-dna complex with the novel fluoroquinolone delafloxacin

Chayen, N.E. , Fisher, L.M. , Najmudin, S. , Pan, X.S. , Sanderson, M.R. , Wang, B.

Primary Citation of Related Structures: 8C41


Proteins
Molecule Chains Sequence Length Organism Sequence
Fused ParE30ParC55 CLEAVAGE COMPLEX of the TOPOISOMERASE IV A 742 Streptococcus Pneumoniae , Synthetic Construct MKNKKDKGLLSGKLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEEINTMIYTIGAGVGADFSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGKGATLQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRVNVLMGDKVEPRRKWIEDNVKFTLEEATVFHMSNIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKSAKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHNLAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKTEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIELKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATPRLSSLEDTAKALEHHHHHH
Fused ParE30ParC55 CLEAVAGE COMPLEX of the TOPOISOMERASE IV B 742 Streptococcus Pneumoniae , Synthetic Construct MKNKKDKGLLSGKLTPAQSKNPAKNELYLVEGDSAGGSAKQGRDRKFQAILPLRGKVINTAKAKMADILKNEEINTMIYTIGAGVGADFSIEDANYDKIIIMTDADTDGAHIQTLLLTFFYRYMRPLVEAGHVYIALPPLYKMSKGKGKKEEVAYAWTDGELEELRKQFGKGATLQRYKGLGEMNADQLWETTMNPETRTLIRVTIEDLARAERRVNVLMGDKVEPRRKWIEDNVKFTLEEATVFHMSNIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKSAKSVGNIMGNFHPHGDSSIYDAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNLLVNGSTGISAGYATDIPPHNLAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKTEIEKLKGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIELKKDANTELVLNYLFKYTDLQINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFATPRLSSLEDTAKALEHHHHHH

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (5'-D(*CP*AP*TP*GP*AP*AP*T)-3') e 7 NA CATGAAT
DNA (5'-D(P*AP*GP*TP*CP*AP*TP*TP*CP*AP*TP*G)-3') f 11 NA AGTCATTCATG
DNA (5'-D(*CP*GP*TP*GP*CP*AP*T)-3') g 7 NA CGTGCAT
DNA (5'-D(P*GP*AP*CP*TP*AP*TP*GP*CP*AP*CP*G)-3') h 11 NA GACTATGCACG
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2022-12-30
Deposition Author(s): Chayen, N.E. , Fisher, L.M. , Najmudin, S. , Pan, X.S. , Sanderson, M.R. , Wang, B.