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FASTA Sequence PDB Format mmCIF Format
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8C3V

Sars-cov-2 delta-rbd complexed with ba.2-13 fab and c1 nanobody

PDB DOI: 10.2210/pdb8c3v/pdb

Classification: VIRAL PROTEIN
Organism(s): Homo Sapiens , Lama Glama , Severe Acute Respiratory Syndrome Coronavirus 2

Deposited: 2022-12-28
Deposition Author(s): Ren, J. , Stuart, D.I. , Zhou, D.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.74 Å

8c3v
Literature

Sars-cov-2 delta-rbd complexed with ba.2-13 fab and c1 nanobody

Ren, J. , Stuart, D.I. , Zhou, D.

Primary Citation of Related Structures: 8C3V


Proteins
Molecule Chains Sequence Length Organism Sequence
BA.2-13 heavy chain H 231 Homo Sapiens , Lama Glama , Severe Acute Respiratory Syndrome Coronavirus 2 QVQLVESGGGLVKPGGSLRLSCAASGFTFRYAWMNWVRQAPGKGLEWVGRIRSKTDGETTDHAAPVKGRFAISRDDSENTLYLQMNSLKTEDTAVYYCTTDWVRGTLLEHDAYDVWGQGTMVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDK
BA.2-13 heavy chain A 231 Homo Sapiens , Lama Glama , Severe Acute Respiratory Syndrome Coronavirus 2 QVQLVESGGGLVKPGGSLRLSCAASGFTFRYAWMNWVRQAPGKGLEWVGRIRSKTDGETTDHAAPVKGRFAISRDDSENTLYLQMNSLKTEDTAVYYCTTDWVRGTLLEHDAYDVWGQGTMVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDK
BA.2-13 heavy chain C 231 Homo Sapiens , Lama Glama , Severe Acute Respiratory Syndrome Coronavirus 2 QVQLVESGGGLVKPGGSLRLSCAASGFTFRYAWMNWVRQAPGKGLEWVGRIRSKTDGETTDHAAPVKGRFAISRDDSENTLYLQMNSLKTEDTAVYYCTTDWVRGTLLEHDAYDVWGQGTMVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPKSCDK
BA.2-13 light chain L 213 Homo Sapiens , Lama Glama , Severe Acute Respiratory Syndrome Coronavirus 2 DIQMTQSPSSLSASVGDRVTITCRAGQSISTFLNWYQQKPGKAPKLLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQREDFATYYCQQSYSMSSFGGGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
BA.2-13 light chain B 213 Homo Sapiens , Lama Glama , Severe Acute Respiratory Syndrome Coronavirus 2 DIQMTQSPSSLSASVGDRVTITCRAGQSISTFLNWYQQKPGKAPKLLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQREDFATYYCQQSYSMSSFGGGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
BA.2-13 light chain D 213 Homo Sapiens , Lama Glama , Severe Acute Respiratory Syndrome Coronavirus 2 DIQMTQSPSSLSASVGDRVTITCRAGQSISTFLNWYQQKPGKAPKLLIYAASSLQSGVPSRFSGSGSGTDFTLTISSLQREDFATYYCQQSYSMSSFGGGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
Spike protein S1 R 202 Homo Sapiens , Lama Glama , Severe Acute Respiratory Syndrome Coronavirus 2 HHHHHHTNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYRYRLFRKSNLKPFERDISTEIYQAGSKPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGKK
Spike protein S1 X 202 Homo Sapiens , Lama Glama , Severe Acute Respiratory Syndrome Coronavirus 2 HHHHHHTNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYRYRLFRKSNLKPFERDISTEIYQAGSKPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGKK
Spike protein S1 Y 202 Homo Sapiens , Lama Glama , Severe Acute Respiratory Syndrome Coronavirus 2 HHHHHHTNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYRYRLFRKSNLKPFERDISTEIYQAGSKPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGKK
Nanobody C1 I 131 Homo Sapiens , Lama Glama , Severe Acute Respiratory Syndrome Coronavirus 2 QVQLVESGGGLVQPGGSLRLSCAASGFTNDFYSIAWFRQAPGKEREGVSWLSVSDNTPTYVDSVKDRFTISRHNANNTVYLQMNMLKPEDTAIYYCAAGRFAGRDTWPSSYDYWGQGTQVTVSSKHHHHHH
Nanobody C1 J 131 Homo Sapiens , Lama Glama , Severe Acute Respiratory Syndrome Coronavirus 2 QVQLVESGGGLVQPGGSLRLSCAASGFTNDFYSIAWFRQAPGKEREGVSWLSVSDNTPTYVDSVKDRFTISRHNANNTVYLQMNMLKPEDTAIYYCAAGRFAGRDTWPSSYDYWGQGTQVTVSSKHHHHHH
Nanobody C1 K 131 Homo Sapiens , Lama Glama , Severe Acute Respiratory Syndrome Coronavirus 2 QVQLVESGGGLVQPGGSLRLSCAASGFTNDFYSIAWFRQAPGKEREGVSWLSVSDNTPTYVDSVKDRFTISRHNANNTVYLQMNMLKPEDTAIYYCAAGRFAGRDTWPSSYDYWGQGTQVTVSSKHHHHHH
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2022-12-28
Deposition Author(s): Ren, J. , Stuart, D.I. , Zhou, D.