8C29
Cryo-em structure of photosystem ii c2s2 supercomplex from norway spruce (picea abies) at 2.8 angstrom resolution
PDB DOI: 10.2210/pdb8c29/pdb
Classification: MEMBRANE PROTEIN Organism(s): Picea Abies
Deposited: 2022-12-21 Deposition Author(s): Kopecny, D. , Kouril, R. , Semchonok, D.A.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 2.785 Å
Cryo-em structure of photosystem ii c2s2 supercomplex from norway spruce (picea abies) at 2.8 angstrom resolution
Kopecny, D. , Kouril, R. , Semchonok, D.A.
Primary Citation of Related Structures: 8C29
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Photosystem II protein D1 | A | 353 | Picea Abies | MTAIIERRESANLWGRFCDWITSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIISGAIIPTSAAIGLHFYPIWEAASVDEWLYNGGPYELIVLHFLLGVACYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFLIYPIGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENQSANAGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVAGIWFTALGISTMAFNLNGFNFNQSVVDSQGRVINTWADIINRANLGMEVMHERNAHNFPLDLAAVESISIGG |
| Photosystem II reaction center protein K | K | 59 | Picea Abies | MPVMLNIFLDDAFIYSNNIFFGKLPEAYAIFDPIVDVMPIIPVLFFLLAFVWQAAVSFR |
| Photosystem II reaction center protein L | L | 38 | Picea Abies | MTQLNPNNQNVELNRTSLYWGLLLIFVLAVLFSNYLFN |
| Photosystem II reaction center protein M | M | 37 | Picea Abies | MEVNTLAFIAVLLFLAISTAFLFILYVKTASASSGNN |
| Oxygen-evolving enhancer protein 1, chloroplastic | O | 341 | Picea Abies | MAASLATGSALQAAATLLQPTKLSVTRTSSSRLSSSSSNLSRAFGFEPATSARVSCSLQDDVKEFAEKCAGATKIAALALAASSLVASGAGAEGVPKRLTYDEIQSQTYLEVKGSGTANQCPTIDGGVEAFPFKPGKYEMKKLCMEPTSFTVKAEGTNKNQPPDFQKTRLMTRLTYTLDEIEGPLEVSQDGKLKFEEKDGIDYAAVTVQLPGGERVPFLFTVKQLVASGTPDSFSGQFLVPAYRGSSFLDPKGRGGSTGYDNAVALPAGGRGDEEELVKENIKDVSASKGEITFSVSKSKPDTGEVIGVFESLQPSDTDLGSKAPKDVKIQGIWYAQIEKP |
| Chlorophyll a-b binding protein, chloroplastic | R | 300 | Picea Abies | MASATAASSLASASSSFFAGGQQLKAEKNVSRIYARFSFSGLKKKTKAVAKPKTKAVAKPKTKAVAKPKPKPRAPTGRPLWLPGAKAPEWLDGSLVGDYGFDPLGLGKPSEYLQYDVDSLDQNLDLNLPGDLLGDFVGDPDIKPSIQPYSEVFGLQRFRECELIHGRWAMLGVLGALAVEGFTGIYWQDAGKVELVEGSSYFGFSLPFNMSTLILIEVLLLGYIEFQRNAEVDPETRLYPGGKYFDPFGLAVDEIKKDRLKLAEIKHARLAMVAFLIFAIQAAVTSKGPLTLFVEFLGKK |
| Chlorophyll a-b binding protein, chloroplastic | S | 303 | Picea Abies | MASIAALGSTAALGRADQMLGNPLNMNMLAASTAASRSSTRLTSPSLQVVSLFGFKKKAAAPPPPSKPKAKAAAANPASEELAKWYGPDRRIFLPEGLLDRADIPEYLNGEVPGDYGYDPFGLSKKPENFDKYQAYELIHARWAMLGAAGFIIPEAFNKFGAYCGPEAVWFKTGALLLDGGTLSYFGASIPINLIAAVVAEVILVGGAEYYRLTNGLDFEDKLHPGGPFDPLGLAKDPDQFALLKVKEIKNGRLAMFSMLGFFVQAYVTGEGPVENLAAHLSDPFGNNLLTVLGGSLERAPTL |
| Photosystem II reaction center protein T | T | 35 | Picea Abies | MEALVYTFLLVSTLGIIFFAIFFREPPKIPNKGGK |
| Photosystem II 5 kDa protein, chloroplastic | U | 133 | Picea Abies | MASLSLCAPCNISSASSLAAGYNKVPCKSVRGGAQVGQVFMVNKPFKASQDWAVHDENVTMKKKEDDQERMQRRRMMFTAAAAAVSAAASQGMMAMAAGEKPTGPEPKRGTPEAKKLYARVCVTMPTASVCHN |
| Photosystem II reaction center protein Ycf12 | V | 33 | Picea Abies | MNLEVIAQLTVLTLTVVSGPLVIVLLAVRKGNL |
| PSII 6.1 kDa protein | W | 146 | Picea Abies | MAATAVFSTTTSVSAFLLNRSLGSAAASRPSSLSVVGLPALDKRCTVCYAQKQEEIVRAKENSQNCMVSLGGAAPLMAVAAALTVSTKEAFALVDERMSTEGTGLGLGLSNPLLGWILVGVFTLIWILYFTTYSGVKEDEDSGLSL |
| Photosystem II CP47 reaction center protein | B | 508 | Picea Abies | MGLPWYRVHTVVLNDPGRLISVHIMHTALVAGWAGSMTLYELAVFDPSDPVLDPMWRQGMFVIPFMTRLGIKDSWTGWNITGETVINPGIWSYEGVAGAHIMFSGLCFLAAIWHWVYWDLEIFCDERTGKLCLDLPKVFGIHLFLSGVACFGFGAFHVTGLYGPGIWVSDPYGLTGKIQPVDPAWGAEGFDPFVPGGIASHHIAAGILGILAGLFHLSVRPPQRLYVGLRMGNIETVLSSSIAAVFFAAFVVAGTMWYGSATTPVELFGPTRYQWDQGYFQQEIDRRVRAGLAENLSLSEAWSKIPEKLAFYDYIGNNPAKGGLFRAGAMDNGDGIAVGWLGHPIFKDKEGNELFVRRMPTFFETFPVVLVDKEGIVKADVPFRRAESKYSVEQVGVTVEFYGGGLDRVSFGDPAIVKKYARRAQLGEIFELDRATLKSDGVFRSSPRGWFTFGHATFALLFFFGHIWHGARTLFRDVFAGIDPDLDARIEFGAFQKLGDPTTKRQVV |
| Photosystem II PsbX | X | 129 | Picea Abies | MASATAISLALPMATASSVSQRDALKAKHAHGSSLFTTPNKLYSPKLASNRSRVVMHASQGKKEQSLAGLTSLALAAAMAIPEIAEAAGSGVSPSLKNFLLSIAAGGVVATAIAGAVIGVSNFDPVKRN |
| Photosystem II reaction center protein Z | Z | 62 | Picea Abies | MTIAFQSAVFALIAISLLLVIGVPVALASPDGWSSSKNVVFSGVSLWIGSVLFVGILNSFIS |
| Photosystem II CP43 reaction center protein | C | 473 | Picea Abies | MKTLYSLRRSYPVETLFNGTIALAGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILLPHLATLGWGVGPGGEIVDTFPYFVSGVLHLISSAVLGFGGIYHALIGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGVGAFLLVLKALYFGGVYDTWAPGGGDVRKITNPTLNPSAIFGYLLKSPFGGEGWIVSVDNLEDVIGGHVWLGSICIFGGIWHILTKPFAWARRAFVWSGEAYLSYSLAALSLFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQRLGASVGSAQGPTGLGKYLMRSPTGEIIFGGETMRFWDLRAPWLEPLRGPNGLDLSKLRKDIQPWQERRSAEYMTHAPLGSSNSVGGVATEINAVNYVSPRSWLATSHFVLGFFLFVGHLWHAGRARAAAAGFEKGIDRDFEPVLSMTPLN |
| Photosystem II D2 protein | D | 353 | Picea Abies | MTVALGKSSKEEKTLFDTVDDWLRRDRFVFVGWSGLLLFPCAYFALGGWFTGTTFVTSWYTHGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFGLIGFMLRQFELARSVQLRPYNAIAFSAPIAVFVPVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSAIGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQPHENLIFPEEVLPRGNAL |
| Cytochrome b559 subunit alpha | E | 83 | Picea Abies | MSGNTGERSFADIITSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTESRQEVPLVTGRFDSLEQLDEFTRSF |
| Cytochrome b559 subunit beta | F | 39 | Picea Abies | MTIDRTYPIFTVRWLAIHGLAVPTVFFSGSISAMQFIQR |
| Chlorophyll a-b binding protein, chloroplastic | G | 275 | Picea Abies | MASCGIGSCAFAGGQISSLKPHNNQLLGVGAGVHGEARVTMRKSSTTKKVSASASPSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAGGPLGEITDPIYPGGSFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK |
| Chlorophyll a-b binding protein, chloroplastic | N | 275 | Picea Abies | MASCGIGSCAFAGGQISSLKPHNNQLLGVGAGVHGEARVTMRKSSTTKKVSASASPSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAGGPLGEITDPIYPGGSFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK |
| Chlorophyll a-b binding protein, chloroplastic | Y | 275 | Picea Abies | MASCGIGSCAFAGGQISSLKPHNNQLLGVGAGVHGEARVTMRKSSTTKKVSASASPSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWACQVILMGAVEGYRIAGGPLGEITDPIYPGGSFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK |
| Photosystem II reaction center protein H | H | 75 | Picea Abies | MATQTIDDTSKTTPRATGVGTSLKPLNSEYGKVAPGWGTTPLMGFTMALFAVFLSIILEIYNSSVLLDGIPVSWG |
| Photosystem II reaction center protein I | I | 36 | Picea Abies | MLTLKLFVYTVVIFFISLFIFGFLSNDPGRNPGRKE |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2022-12-21 Deposition Author(s): Kopecny, D. , Kouril, R. , Semchonok, D.A.