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FASTA Sequence PDB Format mmCIF Format
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8BUU

Are-abcf vmlr2 bound to a 70s ribosome

PDB DOI: 10.2210/pdb8buu/pdb

Classification: RIBOSOME
Organism(s): Bacillus Subtilis Subsp. Subtilis Str. 168 , Neobacillus Vireti

Deposited: 2022-11-30
Deposition Author(s): Crowe-Mcauliffe, C. , Wilson, D.N.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.9 Å

8buu
Literature

Are-abcf vmlr2 bound to a 70s ribosome

Crowe-Mcauliffe, C. , Wilson, D.N.

Primary Citation of Related Structures: 8BUU


Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
16S rRNA a 1554 NA UUUAUCGGAGAGUUUGAUCCUGGCUCAGGACGAACGCUGGCGGCGUGCCUAAUACAUGCAAGUCGAGCGGACAGAUGGGAGCUUGCUCCCUGAUGUUAGCGGCGGACGGGUGAGUAACACGUGGGUAACCUGCCUGUAAGACUGGGAUAACUCCGGGAAACCGGGGCUAAUACCGGAUGGUUGUUUGAACCGCAUGGUUCAAACAUAAAAGGUGGCUUCGGCUACCACUUACAGAUGGACCCGCGGCGCAUUAGCUAGUUGGUGAGGUAACGGCUCACCAAGGCGACGAUGCGUAGCCGACCUGAGAGGGUGAUCGGCCACACUGGGACUGAGACACGGCCCAGACUCCUACGGGAGGCAGCAGUAGGGAAUCUUCCGCAAUGGACGAAAGUCUGACGGAGCAACGCCGCGUGAGUGAUGAAGGUUUUCGGAUCGUAAAGCUCUGUUGUUAGGGAAGAACAAGUACCGUUCGAAUAGGGCGGUACCUUGACGGUACCUAACCAGAAAGCCACGGCUAACUACGUGCCAGCAGCCGCGGUAAUACGUAGGUGGCAAGCGUUGUCCGGAAUUAUUGGGCGUAAAGGGCUCGCAGGCGGUUUCUUAAGUCUGAUGUGAAAGCCCCCGGCUCAACCGGGGAGGGUCAUUGGAAACUGGGGAACUUGAGUGCAGAAGAGGAGAGUGGAAUUCCACGUGUAGCGGUGAAAUGCGUAGAGAUGUGGAGGAACACCAGUGGCGAAGGCGACUCUCUGGUCUGUAACUGACGCUGAGGAGCGAAAGCGUGGGGAGCGAACAGGAUUAGAUACCCUGGUAGUCCACGCCGUAAACGAUGAGUGCUAAGUGUUAGGGGGUUUCCGCCCCUUAGUGCUGCAGCUAACGCAUUAAGCACUCCGCCUGGGGAGUACGGUCGCAAGACUGAAACUCAAAGGAAUUGACGGGGGCCCGCACAAGCGGUGGAGCAUGUGGUUUAAUUCGAAGCAACGCGAAGAACCUUACCAGGUCUUGACAUCCUCUGACAAUCCUAGAGAUAGGACGUCCCCUUCGGGGGCAGAGUGACAGGUGGUGCAUGGUUGUCGUCAGCUCGUGUCGUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCUUGAUCUUAGUUGCCAGCAUUCAGUUGGGCACUCUAAGGUGACUGCCGGUGACAAACCGGAGGAAGGUGGGGAUGACGUCAAAUCAUCAUGCCCCUUAUGACCUGGGCUACACACGUGCUACAAUGGACAGAACAAAGGGCAGCGAAACCGCGAGGUUAAGCCAAUCCCACAAAUCUGUUCUCAGUUCGGAUCGCAGUCUGCAACUCGACUGCGUGAAGCUGGAAUCGCUAGUAAUCGCGGAUCAGCAUGCCGCGGUGAAUACGUUCCCGGGCCUUGUACACACCGCCCGUCACACCACGAGAGUUUGUAACACCCGAAGUCGGUGAGGUAACCUUUUAGGAGCCAGCCGCCGAAGGUGGGACAGAUGAUUGGGGUGAAGUCGUAACAAGGUAGCCGUAUCGGAAGGUGCGGCUGGAUCACCUCCUUUCUA
mRNA u 15 NA GGAGGUNNNNNNAUG
tRNA-fMet v 77 NA CGCGGGGUGGAGCAGUUCGGUAGCUCGUCGGGCUCAUAACCCGAAGGUCGCAGGUUCAAAUCCUGCCCCCGCAACCA

Proteins
Molecule Chains Sequence Length Organism Sequence
30S ribosomal protein S12 L 138 Bacillus Subtilis Subsp. Subtilis Str. 168 , Neobacillus Vireti MPTINQLIRKGRVSKVENSKSPALNKGYNSFKKEHTNVSSPQKRGVCTRVGTMTPKKPNSALRKYARVRLTNGIEVTAYIPGIGHNLQEHSVVLIRGGRVKDLPGVRYHIVRGALDTAGVENRAQGRSKYGTKKPKAK
30S ribosomal protein S13 M 121 Bacillus Subtilis Subsp. Subtilis Str. 168 , Neobacillus Vireti MARIAGVDIPRDKRVVISLTYIFGIGRTTAQQVLKEAGVSEDTRVRDLTEEELGKIRDIIDKLKVEGDLRREVSLNIKRLIEIGSYRGIRHRRGLPVRGQNSKNNARTRKGPRRTVANKKK
30S ribosomal protein S14 N 61 Bacillus Subtilis Subsp. Subtilis Str. 168 , Neobacillus Vireti MAKKSMIAKQQRTPKFKVQEYTRCERCGRPHSVIRKFKLCRICFRELAYKGQIPGVKKASW
30S ribosomal protein S15 O 89 Bacillus Subtilis Subsp. Subtilis Str. 168 , Neobacillus Vireti MAITQERKNQLINEFKTHESDTGSPEVQIAILTDSINNLNEHLRTHKKDHHSRRGLLKMVGKRRNLLTYLRNKDVTRYRELINKLGLRR
30S ribosomal protein S16 P 90 Bacillus Subtilis Subsp. Subtilis Str. 168 , Neobacillus Vireti MAVKIRLKRMGAKKSPFYRIVVADSRSPRDGRFIETVGTYNPVAKPAEVKIDEELALKWLQTGAKPSDTVRNLFSSQGIMEKFHNAKQGK
30S ribosomal protein S17 Q 87 Bacillus Subtilis Subsp. Subtilis Str. 168 , Neobacillus Vireti MSERNQRKVYQGRVVSDKMDKTITVVVETYKKHTLYGKRVKYSKKFKAHDENNQAKIGDIVKIMETRPLSATKRFRLVEVVEEAVII
30S ribosomal protein S18 R 79 Bacillus Subtilis Subsp. Subtilis Str. 168 , Neobacillus Vireti MAGGRRGGRAKRRKVCYFTSNGITHIDYKDVDLLKKFVSERGKILPRRVTGTNAKYQRKLTAAIKRARQMALLPYVSGE
30S ribosomal protein S19 S 92 Bacillus Subtilis Subsp. Subtilis Str. 168 , Neobacillus Vireti MARSLKKGPFVDGHLMTKIEKLNETDKKQVVKTWSRRSTIFPQFIGHTIAVYDGRKHVPVFISEDMVGHKLGEFAPTRTYKGHASDDKKTRR
30S ribosomal protein S20 T 88 Bacillus Subtilis Subsp. Subtilis Str. 168 , Neobacillus Vireti MPNIKSAIKRTKTNNERRVHNATIKSAMRTAIKQVEASVANNEADKAKTALTEAAKRIDKAVKTGLVHKNTAARYKSRLAKKVNGLSA
30S ribosomal protein S2 B 246 Bacillus Subtilis Subsp. Subtilis Str. 168 , Neobacillus Vireti MSVISMKQLLEAGVHFGHQTRRWNPKMKRYIFTERNGIYIIDLQKTVKKVEEAYNFTKNLAAEGGKILFVGTKKQAQDSVKEEAQRSGMYYVNQRWLGGTLTNFETIQKRIKRLKDIEKMQENGTFDVLPKKEVVQLKKELERLEKFLGGIKDMKDLPDALFIIDPRKERIAVAEARKLNIPIIGIVDTNCDPDEIDVVIPANDDAIRAVKLLTSKMADAILEAKQGEEEAEVAEETAPETETTTA
50S ribosomal protein L27 W 94 Bacillus Subtilis Subsp. Subtilis Str. 168 , Neobacillus Vireti MLRLDLQFFASKKGVGSTKNGRDSEAKRLGAKRADGQFVTGGSILYRQRGTKIYPGENVGRGGDDTLFAKIDGTVKFERFGRDRKKVSVYPVAQ
50S ribosomal protein L28 X 62 Bacillus Subtilis Subsp. Subtilis Str. 168 , Neobacillus Vireti MARKCVITGKKTTAGNNRSHAMNASKRTWGANLQKVRILVNGKPKKVYVSARALKSGKVERV
50S ribosomal protein L29 Y 66 Bacillus Subtilis Subsp. Subtilis Str. 168 , Neobacillus Vireti MKANEIRDLTTAEIEQKVKSLKEELFNLRFQLATGQLENTARIREVRKAIARMKTVIREREIAANK
50S ribosomal protein L30 Z 59 Bacillus Subtilis Subsp. Subtilis Str. 168 , Neobacillus Vireti MAKLEITLKRSVIGRPEDQRVTVRTLGLKKTNQTVVHEDNAAIRGMINKVSHLVSVKEQ
50S ribosomal protein L32 0 59 Bacillus Subtilis Subsp. Subtilis Str. 168 , Neobacillus Vireti MAVPFRRTSKMKKRLRRTHFKLNVPGMTECPSCGEMKLSHRVCKACGSYNGKDINVKSN
50S ribosomal protein L33 1 1 49 Bacillus Subtilis Subsp. Subtilis Str. 168 , Neobacillus Vireti MRVNITLACTECGERNYISKKNKRNNPDRVEFKKYCPRDKKSTLHRETK
50S ribosomal protein L34 2 44 Bacillus Subtilis Subsp. Subtilis Str. 168 , Neobacillus Vireti MKRTFQPNNRKRSKVHGFRSRMSSKNGRLVLARRRRKGRKVLSA
30S ribosomal protein S3 C 218 Bacillus Subtilis Subsp. Subtilis Str. 168 , Neobacillus Vireti MGQKVNPVGLRIGVIRDWESKWYAGKDYADFLHEDLKIREYISKRLSDASVSKVEIERAANRVNITIHTAKPGMVIGKGGSEVEALRKALNSLTGKRVHINILEIKRADLDAQLVADNIARQLENRVSFRRAQKQQIQRTMRAGAQGVKTMVSGRLGGADIARSEYYSEGTVPLHTLRADIDYATSEADTTYGKLGVKVWIYRGEVLPTKKKNEEGGK
50S ribosomal protein L35 3 66 Bacillus Subtilis Subsp. Subtilis Str. 168 , Neobacillus Vireti MPKMKTHRGSAKRFKKTGSGKLKRSHAYTSHLFANKSQKQKRKLRKSAVVSAGDFKRIKQMLANIK
50S ribosomal protein L36 4 37 Bacillus Subtilis Subsp. Subtilis Str. 168 , Neobacillus Vireti MKVRPSVKPICEKCKVIRRKGKVMVICENPKHKQKQG
50S ribosomal protein L5 F 179 Bacillus Subtilis Subsp. Subtilis Str. 168 , Neobacillus Vireti MNRLKEKYNKEIAPALMTKFNYDSVMQVPKIEKIVINMGVGDAVQNAKAIDSAVEELTFIAGQKPVVTRAKKSIAGFRLREGMPIGAKVTLRGERMYDFLDKLISVSLPRVRDFRGVSKKSFDGRGNYTLGIKEQLIFPEIDYDKVTKVRGMDIVIVTTANTDEEARELLTQVGMPFQK
50S ribosomal protein L3 D 209 Bacillus Subtilis Subsp. Subtilis Str. 168 , Neobacillus Vireti MTKGILGRKIGMTQVFAENGDLIPVTVIEAAPNVVLQKKTAENDGYEAIQLGFDDKREKLSNKPEKGHVAKAETAPKRFVKELRGVEMDAYEVGQEVKVEIFSAGEIVDVTGVSKGKGFQGAIKRHGQSRGPMSHGSRYHRRPGSMGPVDPNRVFKGKLLPGRMGGEQITVQNLEIVKVDAERNLLLIKGNVPGAKKSLITVKSAVKSK
50S ribosomal protein L4 E 207 Bacillus Subtilis Subsp. Subtilis Str. 168 , Neobacillus Vireti MPKVALYNQNGSTAGDIELNASVFGIEPNESVVFDAILMQRASLRQGTHKVKNRSEVRGGGRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYSYKLPKKVRRLAIKSVLSSKVIDNNIIVLEDLTLDTAKTKEMAAILKGLSVEKKALIVTADANEAVALSARNIPGVTVVEANGINVLDVVNHEKLLITKAAVEKVEEVLA
30S ribosomal protein S8 H 132 Bacillus Subtilis Subsp. Subtilis Str. 168 , Neobacillus Vireti MVMTDPIADMLTRIRNANMVRHEKLEIPASKLKREIAEILKREGFIRDVEFVEDSKQGIIRVFLKYGQNNERVITGLKRISKPGLRVYAKSNEVPRVLNGLGIAIISTSQGVLTDKEARAKQAGGEVLAYVW
50S ribosomal protein L14 K 122 Bacillus Subtilis Subsp. Subtilis Str. 168 , Neobacillus Vireti MIQQETRLKVADNSGAREVLTIKVLGGSGRKTANIGDVIVCTVKQATPGGVVKKGEVVKAVIVRTKSGARRSDGSYISFDENACVIIRDDKSPRGTRIFGPVARELRENNFMKIVSLAPEVI
50S ribosomal protein L6 G 179 Bacillus Subtilis Subsp. Subtilis Str. 168 , Neobacillus Vireti MSRVGKKLLEIPSDVTVTLNDNNTVAVKGPKGELTRTFHPDMEIKVEDNVLTVARPSDQKEHRALHGTTRSLLGNMVEGVSKGFERGLELVGVGYRASKSGNKLVLNVGYSHPVEIVPEEGIEIEVPSQTKVVVKGTDKERVGAIAANIRAVRSPEPYKGKGIRYEGEVVRRKEGKSAK
30S ribosomal protein S9 I 130 Bacillus Subtilis Subsp. Subtilis Str. 168 , Neobacillus Vireti MAQVQYYGTGRRKSSVARVRLVPGEGRIVVNNREISEHIPSAALIEDIKQPLTLTETAGTYDVLVNVHGGGLSGQAGAIRHGIARALLEADPEYRTTLKRAGLLTRDARMKERKKYGLKGARRAPQFSKR
50S ribosomal protein L13 J 145 Bacillus Subtilis Subsp. Subtilis Str. 168 , Neobacillus Vireti MRTTPMANASTIERKWLVVDAAGKTLGRLSSEVAAILRGKHKPTYTPHVDTGDHVIIINAEKIELTGKKLTDKIYYRHTQHPGGLKSRTALEMRTNYPEKMLELAIKGMLPKGSLGRQMFKKLNVYRGSEHPHEAQKPEVYELRG
ExpZ 9 622 Bacillus Subtilis Subsp. Subtilis Str. 168 , Neobacillus Vireti MFKNQRTIVKVSGLEKSFHLRKVLQNLHFEIKNGDRIGLVGYNGTGKTTLANIIFGKITPDNGLIEKSRDLRMGYLSQSIDYEVSHFQQSIAEVEEHELFQHASSLGLNKVFDWSEDRLTHLSGGEKLKLALSMVWATKPDFLILDQPTNHLDFTGINWLVSELEKFHGPVLIISHDRHFLDKTVNRIFELEESRIQFFNGNYSDYRIEKEQRIANQRHQYQVQQRQIEKIETQMVQLKSWSEKAHRDSTKQGSASERRQIGFKEYHRVKAKKLDNQVKSKMKRLQNELNKHKLEKPNEEAAVRFQFDSHGKRGKRIIEAKKLTKMFDDRILFQDSPFYINHGDRIGLLGENGCGKTTLIKMILGDDLSFVGELWKSDSVKIAYLSQDVADLSADKTAIEALGFTDRESILKARTLLANLGLKEQLITKPIGTLSLGERTRVKLVDMLMKEYDVLILDQPTNHLDLPSREQLEQTLSEFTGTIITVSHDHYFLNKLCDRLLVFENQQIKRFEMKPQEYLNKDVKSGDRSEEAMLIIENKIALILGELSLIDQNNPKYYRLDEEFNELLKQKRNLKGKSGGHHHHHHAKGGENLYFQGVADYKDHDGDYKDHDIDYKDDDDKG
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2022-11-30
Deposition Author(s): Crowe-Mcauliffe, C. , Wilson, D.N.