8BD3
Cryo-em structure of the photosystem ii - lhcii supercomplex from chlorella ohadi
PDB DOI: 10.2210/pdb8bd3/pdb
Classification: PHOTOSYNTHESIS Organism(s): Chlorella Ohadii
Deposited: 2022-10-18 Deposition Author(s): Caspy, I. , Fadeeva, M. , Klaiman, D. , Nelson, N.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 2.73 Å
Cryo-em structure of the photosystem ii - lhcii supercomplex from chlorella ohadi
Caspy, I. , Fadeeva, M. , Klaiman, D. , Nelson, N.
Primary Citation of Related Structures: 8BD3
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Chlorophyll a-b binding protein, chloroplastic | 1 | 214 | Chlorella Ohadii | SQWYGPDRPKFLGPYSTNFVPSYLTGEFPGDYGWDTSGLSADPATFARYREIEVIHARWAMLGALGCVVPELLDGTNHIAWFKAGAEIFGDDGIQYLGIPGLINAKSIVATLIVQVVLMSYVEGYRVNGGPAGTGLDAVYPGGNFDPLGLADDPDTLAELKVKEIKNGRLAMLSMFGFFIQAIVTGEGPIKNLNDHLADASANNFYALYAKNLA |
| Chlorophyll a-b binding protein, chloroplastic | 7 | 214 | Chlorella Ohadii | SQWYGPDRPKFLGPYSTNFVPSYLTGEFPGDYGWDTSGLSADPATFARYREIEVIHARWAMLGALGCVVPELLDGTNHIAWFKAGAEIFGDDGIQYLGIPGLINAKSIVATLIVQVVLMSYVEGYRVNGGPAGTGLDAVYPGGNFDPLGLADDPDTLAELKVKEIKNGRLAMLSMFGFFIQAIVTGEGPIKNLNDHLADASANNFYALYAKNLA |
| Cytochrome b559 subunit beta | F | 37 | Chlorella Ohadii | KSYTYPIFTVRWLAVHALAVPTVFFLGAITAMQFIQR |
| Photosystem II reaction center protein H | H | 67 | Chlorella Ohadii | DTGISTPLGTLLKPLNSEYGKVAPGWGTTVLMGIFMALFAVFLVIILEIYNSSVLLDDVTMSWESLA |
| Photosystem II reaction center protein I | I | 34 | Chlorella Ohadii | MLTLKIFVYTVVTFFVSLFIFGFLSNDPGRNPGQ |
| Photosystem II reaction center protein J | J | 38 | Chlorella Ohadii | GTTGRIPLWLVGTVAGVAVIALVGIFFYGSYVGLGSSL |
| Photosystem II reaction center protein K | K | 37 | Chlorella Ohadii | KLPEAYAPFDPIVDVLPVIPVLFLLLALVWQASVSFR |
| Photosystem II reaction center protein L | L | 37 | Chlorella Ohadii | AKPNPNKQSVELNRTSLYWGLLLIFVLAVLFSSYIFN |
| Photosystem II reaction center protein M | M | 57 | Chlorella Ohadii | XXXXXXXXXXXXXXXXXXXXXXXXXMEVNILGVIATALFIIIPTSFLLILYVKTASQ |
| Chloroplast oxygen-evolving enhancer protein 1 | O | 240 | Chlorella Ohadii | LTFDQLQGLTYLQVKGTGIANTCPTLDSGSSNVKDLKPGTYKLGKFCMEPTSFTVKEESQFKGGDAEFVPTKLMTRLTYTLDEMSGQFKVDGSGNVELKETDGIDYAPVTVQLPGGERVPFLFSVKELDAKGNADGFGGEFVVPSYRGATFLDPKGRGAATGYDTAVALPAAGDDEEYLKENIKSAGAMKGQAVFSIAKVDAATGEIAGVFESVQPSDTDLGAKAPKDVKITGLWYAQLS |
| Chlorophyll a b binding CP29 | R | 236 | Chlorella Ohadii | RSGGAGYRQYSGDALWLPNTERPAWLDGSLPGDRGFDPLGLSRPAEYLQIDLDELDQNAAVNKAGGVVGAFTPVADQVSTDSLAPYSEVFGLQRFRECELIHGRWAMLACLGALVQEGVTGDSWVAAQTLVYNQPQYAGIDLPFDIYTLAVLNSVLMGGVELFRNSELDPERRCYPGGAFDPLNLASDDSERTQKLREAEIKHARLAMVSFLGYTVQAWYTGEGALGSLNKFANGF |
| Chlorophyll a b-binding CP26 | S | 257 | Chlorella Ohadii | VSRSGGWLGSDSQNINLDKWYGPDRVLYLPGGLLARDEINPVLNGTLPGDYGYDPLGLAKDAETLAKYRANELLHARWAMLAAAGAIIPEGLAANGADVKGATWFETGAAMLNGGTLNWFAVPFVNFNNPLPLFAVVAINVALMAAAENYRRTEDGPAGYAPGVGKFDESVYSNMDNLYPGGPFDPLGLADDPEVLAELKVKEIKNGRLAMVSFLGFAVQAAVTGEGPYANWSKHVADPFGYNLLTILSSEDRAAVL |
| Chlorophyll a-b binding protein, chloroplastic | 2 | 222 | Chlorella Ohadii | EFYGPDRAKWLGPFSEGSVPSYLKGEFPGDYGWDTAGLSADPETFARYREIEVIHARWAMLGALGCLTPELLQNNGAADFGEAAVWFKAGASIFNEDGLNYLGNPSLIHAQSIVAVLLTQLVIMGAAEAYRYSGEGPVETSGDSLYPGGFFDPLGLADDPDTLAELKVKEIKNGRLAMFSMFGFFVQGLVTGKSPLENLADHLAEPSVNNGFASATKFLPLP |
| Chlorophyll a-b binding protein, chloroplastic | 4 | 222 | Chlorella Ohadii | EFYGPDRAKWLGPFSEGSVPSYLKGEFPGDYGWDTAGLSADPETFARYREIEVIHARWAMLGALGCLTPELLQNNGAADFGEAAVWFKAGASIFNEDGLNYLGNPSLIHAQSIVAVLLTQLVIMGAAEAYRYSGEGPVETSGDSLYPGGFFDPLGLADDPDTLAELKVKEIKNGRLAMFSMFGFFVQGLVTGKSPLENLADHLAEPSVNNGFASATKFLPLP |
| Chlorophyll a-b binding protein, chloroplastic | G | 222 | Chlorella Ohadii | EFYGPDRAKWLGPFSEGSVPSYLKGEFPGDYGWDTAGLSADPETFARYREIEVIHARWAMLGALGCLTPELLQNNGAADFGEAAVWFKAGASIFNEDGLNYLGNPSLIHAQSIVAVLLTQLVIMGAAEAYRYSGEGPVETSGDSLYPGGFFDPLGLADDPDTLAELKVKEIKNGRLAMFSMFGFFVQGLVTGKSPLENLADHLAEPSVNNGFASATKFLPLP |
| Chlorophyll a-b binding protein, chloroplastic | 9 | 222 | Chlorella Ohadii | EFYGPDRAKWLGPFSEGSVPSYLKGEFPGDYGWDTAGLSADPETFARYREIEVIHARWAMLGALGCLTPELLQNNGAADFGEAAVWFKAGASIFNEDGLNYLGNPSLIHAQSIVAVLLTQLVIMGAAEAYRYSGEGPVETSGDSLYPGGFFDPLGLADDPDTLAELKVKEIKNGRLAMFSMFGFFVQGLVTGKSPLENLADHLAEPSVNNGFASATKFLPLP |
| Chlorophyll a-b binding protein, chloroplastic | Q | 222 | Chlorella Ohadii | EFYGPDRAKWLGPFSEGSVPSYLKGEFPGDYGWDTAGLSADPETFARYREIEVIHARWAMLGALGCLTPELLQNNGAADFGEAAVWFKAGASIFNEDGLNYLGNPSLIHAQSIVAVLLTQLVIMGAAEAYRYSGEGPVETSGDSLYPGGFFDPLGLADDPDTLAELKVKEIKNGRLAMFSMFGFFVQGLVTGKSPLENLADHLAEPSVNNGFASATKFLPLP |
| Photosystem II reaction center protein T | T | 30 | Chlorella Ohadii | MEALVYTFLLVGTLGIIFFAIFFREPPRIV |
| Photosystem II reaction center protein Ycf12 | V | 32 | Chlorella Ohadii | NLEIVLQLTALLFIVAAGPLVIVLLSSRGGNL |
| Photosystem II reaction center W protein | W | 60 | Chlorella Ohadii | LVDDRLAGEGTGKILGINDPSLFWAITIVFTIVWGVFYVSTREIDAASDRENDDDFGLTL |
| Photosystem II reaction center protein X | X | 37 | Chlorella Ohadii | AATPSLNNLIGSVVAGGLVLAAIAGAITAVSNFDSIR |
| Multifunctional fusion protein | Y | 221 | Chlorella Ohadii | VWYGPDRPKFLGPFSDGLVPAYLTGEFPGDYGWDTSGLSADPETFKKYRTIEVIHARWAMLGALGCIFPEVLEKYSGVQFGEAVWFKAGAQIFADGGLNYLGNSGLVHAQSIVATLVVQVLLMGAVEIYRANGEGPNGFGEGQDTLYPGGAFDPLGLADDPDTLAELKVKEIKNGRLAMLSMLGFFVQAIVTGKGPLDNLLQHLEEPGEFNFYALYANSLA |
| Photosystem II reaction center protein Z | Z | 62 | Chlorella Ohadii | MLLIFQLALFAFIVVSFLLVVGVPVVLATPEGWAENKGTVFSGIGIWFLLVFLVGILNSFVV |
| Chloroplast oxygen-evolving enhancer protein 3 | U | 144 | Chlorella Ohadii | LDLFDDRKARQAGFDIIYEARDLDLPQGVRDGLAQARENLDVAKARIKEAEKRIDADLDAYIAKAYWTEGRNELRRQVGTLRFDLNAVADTLPKAAKKEAQAAKNEFLAAVEALDLQLRKKNGDKAAAALADTKAKLDAVIAKL |
| Chloroplast PsbY | Q1 | 34 | Chlorella Ohadii | DNRFGTIALLAVPVIGWVLFNILGPLQNQLNAMS |
| Chloroplast photosystem II 10 kDa protein | P1 | 108 | Chlorella Ohadii | KIDISKQGLNSIQNETVKLNLMGKSKTMESKDWVDPQGRKGKGYGVYRFANKYGANVDGYSPIYTPDTWSESGDSYKLGTKGLIAWAGLIVVLLGVGINLVISTSALG |
| Photosystem II oxygen evolving enhancer 2 | F1 | 188 | Chlorella Ohadii | AYGDAARVFAGNITNKSGFIPYAGEGFALLIPSKWNPSKEQDFPGVVLRYEDNGDAVNNLVVLVQKVGKNNIDELGSPDKFLQDNAYLFGESAAFTGETLSEGGFLPNKVAAASVLDVQEATDKKGKKYYKYEVLTRSADGDEGGRHQLIAATVSNGNLYLIKVQCGDKRWFKGAKREAIGAWDSFTV |
| Chlorophyll a-b binding of LHCII | 3 | 221 | Chlorella Ohadii | VEWYGPNRPQFLGPFSNPPSYLKGEFPGDYGWDTAGLSADPETFARYRELEVIHARWAMLGALGCVTPELLQRNGVANFGEAVWFKAGAQIFQEGGLDYLGNPSLIHAQSIVAILLTQLVLMGLIEGYRVNGGPAGEGLDALYPGEAFDPLGLADDPDTFAELKVKELKNGRLAMVSMLGFGVQGLITRKGPIENLADHLAAPDATNFWVDYAPKSAGIGY |
| Chlorophyll a-b binding of LHCII | 5 | 221 | Chlorella Ohadii | VEWYGPNRPQFLGPFSNPPSYLKGEFPGDYGWDTAGLSADPETFARYRELEVIHARWAMLGALGCVTPELLQRNGVANFGEAVWFKAGAQIFQEGGLDYLGNPSLIHAQSIVAILLTQLVLMGLIEGYRVNGGPAGEGLDALYPGEAFDPLGLADDPDTFAELKVKELKNGRLAMVSMLGFGVQGLITRKGPIENLADHLAAPDATNFWVDYAPKSAGIGY |
| Chlorophyll a-b binding of LHCII | N | 221 | Chlorella Ohadii | VEWYGPNRPQFLGPFSNPPSYLKGEFPGDYGWDTAGLSADPETFARYRELEVIHARWAMLGALGCVTPELLQRNGVANFGEAVWFKAGAQIFQEGGLDYLGNPSLIHAQSIVAILLTQLVLMGLIEGYRVNGGPAGEGLDALYPGEAFDPLGLADDPDTFAELKVKELKNGRLAMVSMLGFGVQGLITRKGPIENLADHLAAPDATNFWVDYAPKSAGIGY |
| Chlorophyll a-b binding of LHCII | 8 | 221 | Chlorella Ohadii | VEWYGPNRPQFLGPFSNPPSYLKGEFPGDYGWDTAGLSADPETFARYRELEVIHARWAMLGALGCVTPELLQRNGVANFGEAVWFKAGAQIFQEGGLDYLGNPSLIHAQSIVAILLTQLVLMGLIEGYRVNGGPAGEGLDALYPGEAFDPLGLADDPDTFAELKVKELKNGRLAMVSMLGFGVQGLITRKGPIENLADHLAAPDATNFWVDYAPKSAGIGY |
| Chlorophyll a-b binding of LHCII | P | 221 | Chlorella Ohadii | VEWYGPNRPQFLGPFSNPPSYLKGEFPGDYGWDTAGLSADPETFARYRELEVIHARWAMLGALGCVTPELLQRNGVANFGEAVWFKAGAQIFQEGGLDYLGNPSLIHAQSIVAILLTQLVLMGLIEGYRVNGGPAGEGLDALYPGEAFDPLGLADDPDTFAELKVKELKNGRLAMVSMLGFGVQGLITRKGPIENLADHLAAPDATNFWVDYAPKSAGIGY |
| Chlorophyll a-b binding of LHCII | 6 | 217 | Chlorella Ohadii | EFYGPDRVKFLGPFSGNTPSYLKGEYPGDYGWDTAGLSADPETFARYRELEVIHARWAMLGALGCVTPELLQRNGAANFGEAVWFKAGAQIFQEGGLDYLGNPNLVHAQSIVAILLTQVVLMGLIEGYRVNGGPAGEVVDPIYPGEAFDPLGLADDPDTLAELKVKEIKNGRLAMVSMFGFFIQAIVTGKGPVQNLSDHLASPSTDNFYSLYAKTLA |
| Chlorophyll a-b binding of LHCII | 0 | 217 | Chlorella Ohadii | EFYGPDRVKFLGPFSGNTPSYLKGEYPGDYGWDTAGLSADPETFARYRELEVIHARWAMLGALGCVTPELLQRNGAANFGEAVWFKAGAQIFQEGGLDYLGNPNLVHAQSIVAILLTQVVLMGLIEGYRVNGGPAGEVVDPIYPGEAFDPLGLADDPDTLAELKVKEIKNGRLAMVSMFGFFIQAIVTGKGPVQNLSDHLASPSTDNFYSLYAKTLA |
| Photosystem II protein D1 | A | 336 | Chlorella Ohadii | ESTSLWARFCEWVTSTENRLYIGWFGVLMIPTLLTATSVFIIAFIAAPPVDIDGIREPVSGSLLYGNNIITGAIIPTSNAIGLHFYPIWEAASLDEWLYNGGPYQLIVCHFFLGVCSYMGREWELSFRLGMRPWIAVAYSAPVAAATAVFIIYPLGQGSFSDGMPLGISGTFNFMIVFQAEHNILMHPFHMLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYKFGQEEETYNIVAAHGYFGRLIFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNFNQSVVDSQGRVINTWADIINRANLGMEVMHERNAHNFPLDLA |
| Photosystem II CP47 reaction center protein | B | 504 | Chlorella Ohadii | GLPWYRVHTVVLNDPGRLIAVHLMHTSLVSGWAGSMAFYELAVFDPSDPVLNPMWRQGMFVLPFMTRLGITQSWGGWTISGETASNPGIWSYEGVAAAHIILSGLLFAASIWHWVYWDLELFRDPRTSNPALDLPKIFGIHLFLSGLLCFGFGAFHVTGLFGPGIWVSDPYGITGTVQAVAPSWDATGFDPYNPGGISAHHIAAGILGVLAGLFHLCVRPPQRLYNGLRMGNIETVLSSSIAAVFWAAFVVSGTMWYGSAATPIELFGPTRYQWDLGFFQQEIERRVQTSLAEGKSASQAWAEIPEKLAFYDYIGNNPAKGGLFRAGAMNSGDGIAVGWLGHAVFKDKQGNELFVRRMPTFFETFPVVLLDKDGVVRADVPFRRSESKYSIEQVGVSVTFYGGELDGVTFSDPATVKKYARRAQLGEIFEFDRATLQSDGVFRTSPRGWFTFAHLCFALLFFFGHIWHGARTIFRDVFAGIDADLDEQVEFGAFLKLGDTSTRR |
| Photosystem II CP43 reaction center protein | C | 448 | Chlorella Ohadii | GRDQESTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVAHFVPEKPMYEQGLILLPHLATLGYGVGPGGEVIDTYPYFVSGVLHLISSAVLGFGGVYHSLVGPETLEESFPFFGYVWKDKNKMTTILGIHLIVLGLGAWLLVWKAMYFGGIYDTWAPGGGDVRIITNPTVSPGVIFGYLFRSPFGGDGWIVSVDNMEDVIGGHIWIGTLCIFGGIWHILTKPWAWARRAFVWSGEAYLSYSLGAISIMGFTACCMAWFNTTAYPSEFYGPTGPEASQSQTFTFLVRDQRLGANVASAQGPTGLGKYLMRSPTGEIIFGGETMRFWDFRGPWLEPLRGPNGLDLNKLKNDIQPWQERRAAEYMTHAPLGSLNSVGGVATEINAVNYVSPRSWLATSHFCLGFFFFVGHLWHAGRARAAAAGFEKGIDRDNEPVLSMRPL |
| Photosystem II D2 protein | D | 342 | Chlorella Ohadii | KRGWFDVVDDWLRRDRFVFVGWSGLLLFPTAYLALGGWFTGTTFVTSWYTHGLASSYLEGCNFLTAAVSTPANSMGHSLLFLWGPEAQGDFTRWCQLGGLWTFVALHGSFSLIGFMLRQFEIARSVKIRPYNAIAFSAPISVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSAIGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQPHEKLVFPEEVLPRGNAL |
| Cytochrome b559 subunit alpha | E | 81 | Chlorella Ohadii | SGATGERPFSDILTSIRYWVIHSITIPSLFIAGWLFVSTGLAYDVFGSPRPNEYFTEDRQETPLITDRFNALEQVKKLSEV |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2022-10-18 Deposition Author(s): Caspy, I. , Fadeeva, M. , Klaiman, D. , Nelson, N.