8B6G
Cryo-em structure of succinate dehydrogenase complex (complex-ii) in respiratory supercomplex of tetrahymena thermophila
PDB DOI: 10.2210/pdb8b6g/pdb
Classification: ELECTRON TRANSPORT Organism(s): Tetrahymena Thermophila
Deposited: 2022-09-27 Deposition Author(s): Amunts, A. , Baradaran, R. , Kock Flygaard, R. , Muhleip, A.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 3.0 Å
Cryo-em structure of succinate dehydrogenase complex (complex-ii) in respiratory supercomplex of tetrahymena thermophila
Amunts, A. , Baradaran, R. , Kock Flygaard, R. , Muhleip, A.
Primary Citation of Related Structures: 8B6G
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Diphthamide synthesis protein | CH | 195 | Tetrahymena Thermophila | MLTQRFYMIQFTKEEQSSEEKYLKTREREEDRKKELMHPQKVLNKKENKRKALLSKNQQNKKLIKYLNLNKRQEKLININQEEMSILPPLQYTYSNEESLELLIHSIKGNKDCNSERKAFNLCRSTVLGKHVEPEKCLDKALVFVNCFQKVRRDESAACQSAFNSTLECGKKYSESTISLGSSCQSQLDAYLNCK |
| NmrA domain-containing protein | CE | 322 | Tetrahymena Thermophila | MSLLVVSGANKVGQGIIRGLHSSGKYEKIVVADVFPKYYYLERYLRFKDTLTQNKTKLEEVKLTDKTDLESAIKKASHVVYVTHDYYYNVPSKLNLIKHTATLSRSAGVKRLVNVTPVENDHYGESQAVLAATQSENEARVAFPGLVELKTDLTFGQDSTVVSELLTRLAYGKSIYFKPSAHRISPVHTLNVAEATQRILENNSLQNLRYVARGTESFDWNTIISTLAAAIGKNANLNQNPLENIISPLSDNIVSQTVHHHHYLNLTRFINQYQEPKQTEHHELTNLGVNNLVKFSEFYKPNSVSTQDYQIKTGLSHWAHCL |
| Transmembrane protein, putative | CJ | 103 | Tetrahymena Thermophila | MNHSCQKVFEGFVSALYDTSYFFRNFGPFKATIHYATYANYLAQNWAPRVSYIETSTPAYTLAKNKYAVYIVYGLIGGALIHNYMLDNKAAQKSQQYYLKHRD |
| Transmembrane protein, putative | CN | 62 | Tetrahymena Thermophila | MRRIFWNFKTAFVGLPMFSLAPKNILVYPIVVGVPLYTFIVLQNSVRGFAYFDEYDSDVKEN |
| Cytochrome b-c1 complex subunit 8 | CC | 60 | Tetrahymena Thermophila | MRTKLYNAAYFLLNNNESFGHSFGIRLKIVGLNTWIVGYAVSRYYFSSLRVKAAQDERFE |
| SDHTT11 | CO | 43 | Tetrahymena Thermophila | LPIRNIQFARYHYLAAVTVFTYFATRCCLLDYKKYYPLASVKK |
| SDHD | CD | 44 | Tetrahymena Thermophila | MFKELIHIFRTYYITFRYLKKSNINFLKNLSYTLIAYYLIINFQ |
| Transmembrane protein, putative | CM | 76 | Tetrahymena Thermophila | MARLWWTLDPSKYYLKQISSGGRNEILFTVLGVTAAYWYFGNKRCEHYWRRQIDNCQSWSRAQNINGNNLTVKQYF |
| Transposase | CL | 89 | Tetrahymena Thermophila | MKLDQIISYYITPVRRFDKNLTAEQIYEQYQQAAQFNEIDAFTNIRFHRKFKEYIQTQEQSDYLYEKAKQISTLAQKMFEKKFPEYYTQ |
| Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial | CA | 636 | Tetrahymena Thermophila | MFKYLSKIQRVTLHSKVSKNFAVLSKDHPEKGPSQGHLTDKYTVIDHTYDAIVVGAGGAGLRAAFGLVEEGFKTACITKLFPTRSHTVAAQGGINAALGNMTEDDWKWHFYDTVKGSDWLGDQDAIQYMTREAPAAVLELESYGLPFSRTPEGKIYQRAFGGQSLKFGKGGQARRTACAADRTGHAMLHTLFGRSLAYNCNFFIEYFVIDLIMDEEGACRGVICMSMADGSIHRIRAHYTVLAAGGYGRSYLSCTAAHTCTGDGMALATRAGLPLEDPEFVQFHPTGIYGSGCLMTEGCRGEGGILVNSNGEAFMEKYAPTAKDLASRDVVSRAMTIEILEGRGVGPKKDHIFLQLHHLSPETLHQRLPGISETARIFAGVDVTKEPAPVVPTVHYNMGGVPTNWKTEVITQDKNGKDKIVPGLLAAGENACASVHGANRLGANSLLDIVVFGRAAAKLVKEKLKPGTPHKDLPKNAGEQALARLDKYRFANGEYTTHHVRTAMQETMQRHAAVFRIEKLMAEGVQKLDHIYEQSKSLKTFDRGLVWNTDLIETLELENLLLCSKQTLLAGLLRKESRGAHARDDFKERDDKNWMKHSLTWIKDVNTGKTEVTYRDVINHTLDSEVTPVPPAKRSY |
| DUF4885 domain-containing protein | CI | 114 | Tetrahymena Thermophila | MFSDFNMYEAKVFLKAVADAQNTFRQTAQQENQLARYESQSQSLLNGSTSGAISITGDNIQQGRNFKALKEVKLFQYSNEIFKKYLAGFDSFSGDYTAFKKFLNESVKKIEQDA |
| Succinate dehydrogenase (quinone) | CB | 312 | Tetrahymena Thermophila | MLRTIFKTRSLFNASVSRFGSGFDRIAESNDATSICLESISGTIKGLQKANYVVEHNPNLTSEEKKHLKQFLVYRYNPADPHDQPKYVSYWCDIKKFPPMFLDAILYIKNELDPTLSIRRSCREGICGSCAVNCDGLHTLACISGFNRDLSKPTIITPLGHMFILKDLVVDMTNFYAQYKMIEPYLKRKTPKPDANKEYPQSPEQRALLDGLYECVLCAACSTSCPSYWWHPDRYLGPAILQQAYRWIVDSRDEYTQERIERIAEDVRLDDCQQIGMCSFTCPKGLNPQLSLKNLMDMVKDFRQKRIEQEVL |
| Transmembrane protein, putative | CF | 296 | Tetrahymena Thermophila | MIKYLLHQLFIYIYVAEVLLGCIFAFAETVFFHSDQDEDYFLQIKQIQIKNQKRFRNNQKKSRSFKKKIINQQLVSKMVRLNLKSNVDQNEYPFLAKWDKDMRQNYEEYQNRIDATTYHLQRSQRGIAVFGEWMYPRYFQKDILELEVLRRKQQLGKIYPEEVSSYTQINPDIANDLNLTFNAKLLWPVRGMTVGAGFFAFAHLFNLPYSFRLGLFVLPTAVELAFTWGNKTSQFKSIEFMDYLLQYRVSKALLEKNAKHFAEKKAAYQKEINSSQSVQDLYNQLITLVSEQAPSE |
| SDHTT3 | CG | 198 | Tetrahymena Thermophila | MSLVSLFKNTFLKSRVIGLSFQAQRVMAQMAKTDFENPDEHFLLNDAMKYNELVFYGRLAENWSINPELFGKAELAKYNEAKQTLIDFNQYHALVQNLHEFYWELKTIYLELSRGVATSNFHNKREVTHSIIESDIKNSIHKYIQLIDDLKDYPEWQHKVREEIGYYAHMIYTSVNHDGNFPEIFKEFNKVDSLYYFK |
| Transmembrane protein, putative | CK | 93 | Tetrahymena Thermophila | MLDDTKYIQMAQKFPRNVSVQLNKKLFVTRTWFRNYYFVGVFGIFAYFIYNQPKIFAPFSGYPTTVAYKAQPDFLNDQVIFYSQQRQNTLKNF |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2022-09-27 Deposition Author(s): Amunts, A. , Baradaran, R. , Kock Flygaard, R. , Muhleip, A.