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FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

8B4H

Ista transposase cleaved donor complex

PDB DOI: 10.2210/pdb8b4h/pdb

Classification: DNA BINDING PROTEIN
Organism(s): Geobacillus Stearothermophilus , Synthetic Construct

Deposited: 2022-09-20
Deposition Author(s): Araujo-Bazan, L. , Arias-Palomo, E. , Berger, J.M. , De La Gandara, A. , Spinola-Amilibia, M.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.35 Å

8b4h
Literature

Ista transposase cleaved donor complex

Araujo-Bazan, L. , Arias-Palomo, E. , Berger, J.M. , De La Gandara, A. , Spinola-Amilibia, M.

Primary Citation of Related Structures: 8B4H


Proteins
Molecule Chains Sequence Length Organism Sequence
Putative transposase for insertion sequence element IS5376 A 406 Geobacillus Stearothermophilus , Synthetic Construct MITRGEFFMIKEMYERGMSISDIARELGIDRKTVRKYIHSPNPPSKSKRKQRKSKLDPFKPYLQKRMLEDGVFNSEKLFFEIRQQGYTGGKTILKDYMKPFRETAKKKYTVRYETLPGEQMQVDWKEVGEVVIEGKKVKLSLFVATLGYSRMKYAVFTTSQDQEHLMECLIQSFKYFGGVPKKVLFDNMKTVTDGREQGVVKWNQRFSEFASYYGFIPKVCRPYRAQTKGKVERAIQYIMDHFYVGTAFESIEELNFLLHRWLDQVANRKPNATTGISPQERWAEESLKPLPLKDYDTSYLSYRKVHWDGSFSYKGEQWLLSAEYAGKEILVKERLNGDIRLYFRGEEISHVDQQKKVISFAEKIKKKQTEMAATISPVSVEVDTRPLSVYDAFLRGESSENLYFQ
Putative transposase for insertion sequence element IS5376 B 406 Geobacillus Stearothermophilus , Synthetic Construct MITRGEFFMIKEMYERGMSISDIARELGIDRKTVRKYIHSPNPPSKSKRKQRKSKLDPFKPYLQKRMLEDGVFNSEKLFFEIRQQGYTGGKTILKDYMKPFRETAKKKYTVRYETLPGEQMQVDWKEVGEVVIEGKKVKLSLFVATLGYSRMKYAVFTTSQDQEHLMECLIQSFKYFGGVPKKVLFDNMKTVTDGREQGVVKWNQRFSEFASYYGFIPKVCRPYRAQTKGKVERAIQYIMDHFYVGTAFESIEELNFLLHRWLDQVANRKPNATTGISPQERWAEESLKPLPLKDYDTSYLSYRKVHWDGSFSYKGEQWLLSAEYAGKEILVKERLNGDIRLYFRGEEISHVDQQKKVISFAEKIKKKQTEMAATISPVSVEVDTRPLSVYDAFLRGESSENLYFQ
Putative transposase for insertion sequence element IS5376 C 406 Geobacillus Stearothermophilus , Synthetic Construct MITRGEFFMIKEMYERGMSISDIARELGIDRKTVRKYIHSPNPPSKSKRKQRKSKLDPFKPYLQKRMLEDGVFNSEKLFFEIRQQGYTGGKTILKDYMKPFRETAKKKYTVRYETLPGEQMQVDWKEVGEVVIEGKKVKLSLFVATLGYSRMKYAVFTTSQDQEHLMECLIQSFKYFGGVPKKVLFDNMKTVTDGREQGVVKWNQRFSEFASYYGFIPKVCRPYRAQTKGKVERAIQYIMDHFYVGTAFESIEELNFLLHRWLDQVANRKPNATTGISPQERWAEESLKPLPLKDYDTSYLSYRKVHWDGSFSYKGEQWLLSAEYAGKEILVKERLNGDIRLYFRGEEISHVDQQKKVISFAEKIKKKQTEMAATISPVSVEVDTRPLSVYDAFLRGESSENLYFQ
Putative transposase for insertion sequence element IS5376 D 406 Geobacillus Stearothermophilus , Synthetic Construct MITRGEFFMIKEMYERGMSISDIARELGIDRKTVRKYIHSPNPPSKSKRKQRKSKLDPFKPYLQKRMLEDGVFNSEKLFFEIRQQGYTGGKTILKDYMKPFRETAKKKYTVRYETLPGEQMQVDWKEVGEVVIEGKKVKLSLFVATLGYSRMKYAVFTTSQDQEHLMECLIQSFKYFGGVPKKVLFDNMKTVTDGREQGVVKWNQRFSEFASYYGFIPKVCRPYRAQTKGKVERAIQYIMDHFYVGTAFESIEELNFLLHRWLDQVANRKPNATTGISPQERWAEESLKPLPLKDYDTSYLSYRKVHWDGSFSYKGEQWLLSAEYAGKEILVKERLNGDIRLYFRGEEISHVDQQKKVISFAEKIKKKQTEMAATISPVSVEVDTRPLSVYDAFLRGESSENLYFQ

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (57-MER) / right IS21 transposon end (insertion sequence IS5376) e 60 NA ATTCATGTCAAGGCCGATTATTTTTTCCCCAAAATCGCCGGTTTAAAATTCCCCAGAAGG
DNA (57-MER) / right IS21 transposon end (insertion sequence IS5376) g 60 NA ATTCATGTCAAGGCCGATTATTTTTTCCCCAAAATCGCCGGTTTAAAATTCCCCAGAAGG
DNA (55-MER) / right IS21 transposon end (insertion sequence IS5376) f 55 NA CCTTCTGGGGAATTTTAAACCGGCGATTTTGGGGAAAAAATAATCGGCCTTGACA
DNA (55-MER) / right IS21 transposon end (insertion sequence IS5376) h 55 NA CCTTCTGGGGAATTTTAAACCGGCGATTTTGGGGAAAAAATAATCGGCCTTGACA
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2022-09-20
Deposition Author(s): Araujo-Bazan, L. , Arias-Palomo, E. , Berger, J.M. , De La Gandara, A. , Spinola-Amilibia, M.