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8AXA

Cryo-em structure of shcas12k-sgrna-dsdna ternary complex (type v-k crispr-associated transposon)

PDB DOI: 10.2210/pdb8axa/pdb

Classification: DNA BINDING PROTEIN
Organism(s): Scytonema Hofmannii

Deposited: 2022-08-31
Deposition Author(s): Fuglsang, A. , Mesa, P. , Montoya, G. , Pape, T. , Sofos, N. , Stella, S. , Stutzke, L.S. , Temperini, P. , Tenjo-Castano, F.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.96 Å

Literature

Cryo-em structure of shcas12k-sgrna-dsdna ternary complex (type v-k crispr-associated transposon)

Fuglsang, A. , Mesa, P. , Montoya, G. , Pape, T. , Sofos, N. , Stella, S. , Stutzke, L.S. , Temperini, P. , Tenjo-Castano, F.

Primary Citation of Related Structures: 8AXA


Proteins
Molecule Chains Sequence Length Organism Sequence
Cas12k A 651 Scytonema Hofmannii MSQITIQARLISFESNRQQLWKLMADLNTPLINELLCQLGQHPDFEKWQQKGKLPSTVVSQLCQPLKTDPRFAGQPSRLYMSAIHIVDYIYKSWLAIQKRLQQQLDGKTRWLEMLNSDAELVELSGDTLEAIRVKAAEILAIAMPASESDSASPKGKKGKKEKKPSSSSPKRSLSKTLFDAYQETEDIKSRSAISYLLKNGCKLTDKEEDSEKFAKRRRQVEIQIQRLTEKLISRMPKGRDLTNAKWLETLLTATTTVAEDNAQAKRWQDILLTRSSSLPFPLVFETNEDMVWSKNQKGRLCVHFNGLSDLIFEVYCGNRQLHWFQRFLEDQQTKRKSKNQHSSGLFTLRNGHLVWLEGEGKGEPWNLHHLTLYCCVDNRLWTEEGTEIVRQEKADEITKFITNMKKKSDLSDTQQALIQRKQSTLTRINNSFERPSQPLYQGQSHILVGVSLGLEKPATVAVVDAIANKVLAYRSIKQLLGDNYELLNRQRRQQQYLSHERHKAQKNFSPNQFGASELGQHIDRLLAKAIVALARTYKAGSIVLPKLGDMREVVQSEIQAIAEQKFPGYIEGQQKYAKQYRVNVHRWSYGRLIQSIQSKAAQTGIVIEEGKQPIRGSPHDKAKELALSAYNLRLTRRSGSEFELENLYFQ

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
sgRNA b 261 NA GGAUAUUAAUAGCGCCGCAAUUCAUGCUGCUUGCAGCCUCUGAAUUUUGUUAAAUGAGGGUUAGUUUGACUGUAUAAAUACAGUCUUGCUUUCUGACCCUGGUAGCUGCUCACCCUGAUGCUGCUGUCAAUAGACAGGAUAGGUGCGCUCCCAGCAAUAAGGGCGCGGAUGUACUGCUGUAGUGGCUACUGAAUCACCCCCGAUCAAGGGGGAACCCUCCAAAAGGUGGGUUGAAAGGAGAAGUCAUUUAAUAAGGCCACU
DNA target strand c 55 NA CTAGAAAGACTTTTAACAGTGGCCTTATTAAATGACTTCTCAACCATCTTGCTGA
DNA non-target strand d 55 NA TCAGCAAGATGGTTGAGAAGTCATTTAATAAGGCCACTGTTAAAAGTCTTTCTAG
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2022-08-31
Deposition Author(s): Fuglsang, A. , Mesa, P. , Montoya, G. , Pape, T. , Sofos, N. , Stella, S. , Stutzke, L.S. , Temperini, P. , Tenjo-Castano, F.