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FASTA Sequence PDB Format mmCIF Format
FASTA Sequence PDB Format PDB Format(gz) PDBx/mmCIF Format PDBx/mmCIF Format(gz) PDBML/XML Format Validation Full PDF Validation CIF

8AMZ

Spinach 19s proteasome

PDB DOI: 10.2210/pdb8amz/pdb

Classification: PLANT PROTEIN
Organism(s): Eubacterium Ramulus

Deposited: 2022-08-04
Deposition Author(s): Grishkovskaya, I. , Haselbach, D. , Kandolf, S. , Meinhart, A.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.3 Å

8amz
Literature

Spinach 19s proteasome

Grishkovskaya, I. , Haselbach, D. , Kandolf, S. , Meinhart, A.

Primary Citation of Related Structures: 8AMZ


Proteins
Molecule Chains Sequence Length Organism Sequence
26S proteasome regulatory subunit 7 H 426 Eubacterium Ramulus MAIEHEDDLKDEKNPRPLDEDDIALLKTYGLGPYSASIKKVEKEIKDMSKKVNDLIGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIINPNTEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMYAIRARRKTVTEKDFLDAVNKVIKGYQKFSATPKYMVYN
VWFA domain-containing protein W 403 Eubacterium Ramulus MVLEATMICIDNSEWMRNGDYSPNRFQALSDAVNLICGAKTQSNPENTVGILTMAGKGVRVLVTPTSDLGKILACMHGLDIGGEMNLAAGIQVAQLALKHRQNKKQQQRIIVFAGSPVNYDKKVLEMIGRKLKKNSVALDVVDFGEDEEGKSEKLEALVAAVNNNETSHIVHVPPGGIALSDVLISTPIFTGDGEGGSGFAAAAAAAAAGGVSGYDFGVDPNLDPELALALRVSMEEERARQEAAAKRAAEEATGQEKGGEQSSQDATMGESSNAAISGADKKNDMTEDDENDLLQQALAMSMDDPVSTTIVQDTDMADAAGDDQDLQLALQLSVEEGAKESTSQSSQTDMSKLLADQSFVSSILASLPGVDPNDPSVKDLLASMHSQSEKKDEDKPPSEEEK
PCI domain-containing protein O 386 Eubacterium Ramulus MSALQYLDTLRSAHPELGEWYNTLADLYQKKLWHQLTLELEKFVALAVFQAGDALIQLYHNFITDFETKINLLKLAHFAVIVSRQYAEKEAAIGYLEGVTEKLHATKENRIEEPVLYIKMQIALFKLEQGEQKECKKLLDNGKTTLDSMTDIDPSVYATFYWVSSQYHKARQEFAEFYKNALLYLAYTSVESLSESFKLDLAFDLSLSALLGENIYNFGELLAHPILKSLLGTKVEWLYYILQAFNTGDLIRYQELCNVHKDALNAQPALVANERKLLEKINILCLMEIIFNRPAEDRTIPLKVIAERTRLSIEDVEYLLMKSLSVHLIEGIIDQMEGTVHVSWVQPRVLGIPQITSLRDRLDSWLGKVNTALLSVEAETPDLVAS
MPN domain-containing protein U 304 Eubacterium Ramulus QIFSSKSIEKVVVHPLVLLSIVDHYNRVARDTKKRVIGVLLGSTFKGTVDVTNSYAVPFEEDDKDSSIWFLDHNYHESMFSMFRRINAKEHVVGWYSTGPKLRENDLDVHRLFSDYVPNPVLVIIDVQPEELGIPTKAYYAVEEVKENATQKSQKVFVHVPSEIAAHEVEEIGVEHLLRDVKDTTISTLATEVTGKLGALKGLDARLREIRSYLELVIQEKLPLNHEILYHLQDVFNLLPNLSVLELVKAFAVKTNDMMLVIYLSSLIRSVIALHNLINNKMLNKEHEKAEDSKSLAITSVAGS
PCI domain-containing protein Q 421 Eubacterium Ramulus MATFLPATTDSLAQALEASSTADSILILQRLLADPSSSPDALRIKEQAITKLTDYLRQENKAEDLRILLTQLRSYFSLIPKAKTAKIVRVIIDTVAKIPNSTELQISLCKDMIQWTRDEKRTFLRQRVEARLAALLMETKEFPEALSLLSGLIKEVRRLDDKLLLVDIELLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTIDLQSGILHAEEKDYKTGYSYFYEAFEAFNALEDPRAVYSLKYMLLCKVMVNQADDVAGIISSKAGLQYLGPDLDAMKAIADAYSKRSLKLFEASLVNFKAQLQEDPIIHRHLSSLYDTLLEQNLCRLIEPFSKVEISHIAELIELPVDHVERKLSQMILDKKFAGTLDQGAGCLIIFDDHKTEDIYEATLDTISNVAKVVDSLFVRSAKIMA
PCI domain-containing protein P 442 Eubacterium Ramulus MDNGGNLEAQIDALLNVEKQMRLAGDVAGTRKAACDILDLCFQSKAWKTLNDQIVVLSKRRGQLKQAVTAMVQQAMGYIDQTPDLDIRVELIKTLNSVSAGKIYVELERARLIKILAKIKEQQGLIDEAAELMQEIAVETFGAMAKTEKIAFILEQVRLCLDRKDYIRAQILSRKISPRVFDIDPSKEKKKPKEGDNIVEEAPADIPSLPELKRIYYELMIRYYKHHNDYLEICRCYKSIYEISSVKEDPEQWTPILRKICWYLALAPHDPMQSSLLNSTLEDKNLFEIPKFKSLLKQLVTMEVILWTVLWNEFESEFDNEKNLLGGPLGEKAGEDLKQRVIEHNILVISKYYSRITLKRLSDLLCLSLQEAEKHLSDMVVSKALIAKIDRPMGIVCFQVVKDSNDILNSWSMNLEKLLDLVEKSCHQIHKETMVHKASLEV
26S proteasome non-ATPase regulatory subunit 2 homolog Z 895 Eubacterium Ramulus MDPEPSNTGAGNPTENRKEATTKVPSKDPKKKDDKKDEDLSEEDLALKQQLELYVERVQDPDAGLQRVALESMRQEIRSATSSMTSVPKPLKFLRPHYGTLKAFYETMSDSDLKEFLADILSVLALTMSAEGERESLKYRLLGSEGDIGSWGHEYVRNLAGEIAQEYSKQHQNEEAPFDDLMDLVQQIIAFHMKHNAEPEAVDLLMEVEDLDLLQEHVDEKNYKRTCLYLTAAAKYLASPDDMLVLDIAHSIYMKCEEYPSALQVSLVLDNLQYVKHIFTSCNDLLRKKQFCYILARHGVLFELDDNMVLDDDEREQMQDIINNYKLSEGYLTLARDIEVMEAKSPEDIYKAHLLDGRASAGATVDSARQNLAATFVNAFVNAGFGQDKLMTGPADSSSGSSSGNWLFKNKEHGKTSAAASLGMILLWDVDSGLAQLDKYFHSTDNHVIAGALLGVGIVNCGVKNDCDPALALLSDYVDKEDPAIRIGAIMGLGISYANTQNEQLRSKLTPILGDTNASLDVIAFTAISLGLVFVGSCNEEVAQAIIFALMDRSEADLGEPLARLLPLGLGLLYLGKQESVEATAEVSKTFNEKIRKHCDMTLLSCAYAGTGNVLKVQSLLGHCAQHLDKGETHQGPAVLGIAMVAMAEELGVEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDSDLEVAMAAIISLGLIGAGTNNARIAGMLRNLSSYYYKDASALFCVRIAQGLVHMGKGLLTLNPYHSDRFLLSPSAHAGLVIMLHACLDMKAIILGKYHYMLYFLVLAMQPRMLLTVDENLKPLSVPVRVGQAVDVVGQAGRPKTITGFQTHSTPVLLSAGDRAELATEKYIPLSSILEGFVILKENPEYREEH
26S proteasome non-ATPase regulatory subunit 1 homolog N 1000 Eubacterium Ramulus MANLATSAGGMLAMLSEHSTSLKLHALSNLNVYAQFLWPEISTSIPLLESLYEDEEFSQRPLAALVVSKVFYFLGELNDSLAYALGAGSLFDVSEDSDYVRTLLDKAIDEYASLRNKSAESKEEAVNIDPRLEAIVERMLEKCILDGRYQQAMGMAIECRRLDKLEEAIMRSDNAPGSLAYCINVSHSYVNRREYRQEVLRLLVRVYQKLPSPDYLSICQCLMFLDQPEAVASILEKLLRAEKLEDTLLSFQIAFDLVENEHQAFLLNVRDRLSKPKSSSQLPISTEPESSQTENTTASEDVQMSDETRVSDAVVGEMDPTEARYAERLTKIKGILSGETSIQLTLQFLYSHNKSDLLILKTIKQSVEMRNSVCHSATIYANAIMHAGTTVDTFLRENLDWLSRATNWAKFSATAGLGVIHRGHLQQGRSLMAPYLPQGGAGGGGSPYSEGGALYALGLIHANHGEGIKQFLRDSLRSTNVEVIQHGACLGLGLAALGTADEDVFEDIKNVLYTDSAVAGEAAGISMGLLMVGTASEKAGEMLAYAHETQHEKIIRGLALGIALTVYGREEEADTLIEQMTRDQDPILRYGGMYALALAYRGTSNNKAIRQLLHFAVSDVSDDVRRTAVLALGFVLYSEPEQTPRIVSLLSESYNPHVRYGAALAVGISCAGTGLSEAISLLEPLTSDVVDFVRQGALIAMAMVMVQITEAMDSRVGTFRRQLEKIILDKHEDTMSKMGAILASGILDAGGRNVTIRLLSKSKHDKITAVVGLAVFSQFWYWYPLIYFISLAFSPTAFVGLNYDLKVPKFDFLSHAKPSLFEYPKPTTVPTTASAVKLPTAVLSTSVKAKARAKKEAEQKDKSVGSEPSASTSASGKGKSSTEKEGDSMLVDSLPEKKAEAEPCFETITNPARVVPAQEKFIKFLEGSRYMPVKLAASGFVLLKDLRPEEPEVLSLTDAPASASATTNSAAVAAPVQQGTVAAMAVDEEPQPPQPFEYTS
PCI domain-containing protein R 386 Eubacterium Ramulus MEAQEGSQNEHLKLANKIFHLTHPDVEDIEKVSLKEEVLSAIKSDFMVSLYETLAGNGVLELDQALLDSMRQSIEDELKKLDEKIADAEENLGESEVREAHLAKSLFYIRIGDKDKALEQLKVTETKTVAVGQKMDLVFFTLQVGLFDMDFDLISRSIDKAKNLFEEGGDWERKNRLKVYEGLYCMSTRDFKKAASLFLDSISTFTTYELFPYDTFIFYTVLTSIISLDRVSLKQKVVDAPEILTVIGKIPYLSEFLNSLYDCQYKSFFSAFAGLTEQIKFDRYLHRHFRYYMREVRTVVYSQFLESYKSVTIEAMAKAFGVTVEFIDLELSRFIAAGKLHCKIDKVVGVLETNRPDAKNALYQATIKQGDFLLNRIQKLSRVIDL
AAA domain-containing protein I 444 Eubacterium Ramulus MGQNSSGLNRQGGPPGDRKDGEKKEKKYEPAAPPARVGRKQRKQKGSESAARIPTVTPLTKCKLRLLKLERIKDYLLMEEEFVANQERLKPQEEKTEEDRSKVDDIRGSPMSVGSLEELIDENHAIVSSSVGPEYYVSIMSFVDKDQLEPGCSILMHNKVLSVVGLLQDEVDPMVSVMKVEKAPLESYADIGGLDPQIQEIKEAVELPLTHPELYEDIGIKPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKLVRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNKIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFTIHTSKMTLSDDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDFKKAKEKVMFKKKEGVPEGLYM
AAA domain-containing protein J 404 Eubacterium Ramulus MATMEADQKTVKQGEGLRQYYLQHIHELQLRVRNKNHNLQRLEAQRNDLNSHVRALKEELQLLQEPGSYVGEVVKVMGKSKVLVKVHPEGKYVVDIDKNIDITKLTPTTRVALRNDSYVLHLVLPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDPALLRPGRIDRKIEFPNPTEESRFDILKIHSRRMNLMRGIDLKKIGDKMNGASGAELKSVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKDTDKNMSLRKLWK
AAA domain-containing protein K 420 Eubacterium Ramulus MAASAMVLDPKPVPPPPQPLEPPATVSFTASEDTSVVEEEDLYGRLKSLERQIEFKGIQEEYVKDELKNLKREHLRAQEEVKRIQSVPLVIGQFMEMVDQNNGIVGSTTGSNYYVRILSTINRELLKPSASVALHRHSNALVDVLPPEADSSISLLSQSEKPDVSYNDIGGCDIQKQEIREAVELPLTHHDLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTGADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLSDEVDLEDYVSRPDKISAAEITAICQEAGMHAVRKNRYVILPKDFEKGYRSNVKKPDTDFDFYK
AAA domain-containing protein L 397 Eubacterium Ramulus MATEEDVKRRAATSEYNKKLLQHRELESRSRKVKEELRSAKKDYTKTEDDLKSLQSVGQIIGEVLRPLDDERLIVKASSGPRYVVGCRSKVDKEKLTSGTRVVLDMTTLTIMRALPREVDPVVYNMLHEDPGNISYSAVGGLSDQIRELRESIELPLMNPELFIRVGIKPPKGVLLYGPPGTGKTLLARAIASNIDANFLKVVSSAIIDKYIGESARLIREMFNYAREHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQLDGFDQLGKVKMIMATNRPDVLDPALLRPGRLDRKIEIPLPNEQSRMEILKIHGAGIAKHGEIDYEAVVKLAEGFNGADLRNICTEAGMSAIRAERDYVIHEDFMKAVRKLNEAKKLESSATYSADFGKD
AAA domain-containing protein M 427 Eubacterium Ramulus MASASATAMVEDPNFQDDQLANLTTEDIARASRILDNEIRILKEDVQRTTLELDSFKEKIKENQEKIKLNKQLPYLVGNIVEILEMNPEDEAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDKLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYSDIGGLEKQIQELVEAIVLPMTHKERFQTIGIRPPKGVLLYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFQLAKEKAPCIIFIDEIDAIGTKRFDSEVSGDREVQRTMLELLNQLDGFSSDERIKVIAATNRADILDPALMRSGRLDRKIEFPHPTEEARARILQIHSRKMNVHPDVNFEELARSTDDFNGAQLKAVCVEAGMLALRRDATEVNHEDFNEGIIQVQAKKKASLNYYA
26S proteasome regulatory subunit RPN11 V 309 Eubacterium Ramulus MDRLTRMMAGAGGALGHPPPDSPTLDTSEQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVKVVDVFAMPQSGTGVSVEAVDPVFQTNMLDMLKQIGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVKGKVVMDAFRLINPQTMMLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRKNELEEKMLLNLHKKKWNDGLTLKKFDVHSKTNEQTVQEMLGLAIKYNKAVQEEDELTPEKLVIAKVGRQDAKKHLEEHVSNLMSSNIIQTLGTMLDTVIF
PCI domain-containing protein S 487 Eubacterium Ramulus MTQDVEMHDTQPLSISLSSVDPPTLKHLKEIASLLETGSYTKEARRISRAIRLTFAVRRKLTARVLHFFLDYALTPGSEAHGKISAFLPKGGEHEMEVDTATSAVQPSGKSTLPELEIFCYLIVLLFLIDQKLHNEAKACASASIARLKSLKRRVADVLASKLYSFYSLSYELTGDLAEIRGELLTLHRLTTLHHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPSFGAHSNQQHCRHLFYVGKIQTIQLEYTDAKESLLQAARKAPIAARGFRIQCNKWAVIVRLLLGEIPERTMFMQKGMEKALRPYFELTNAVRIGDLELFRGVTEKFSSTFDKDRTHNLIVRLRHNVIRTGLRNISISYSRISLSDVAKKLRLDSPNPVADAESIVAKAIRDGAIDATLDHGNGWMLSKETGDIYSTTEPQSAFDSRIAFCLNMHNEAVRALRYPPNSHKEKESAEKRRERQQQEQELAKHIAEEEDDDF
PCI domain-containing protein T 267 Eubacterium Ramulus MDPKLTEIAQTFERFKAASVRNDFDTCTRLLTQLKVSLIEYRSLPPMFEATPNAVHELTLARDIYEHAVVLSVKMEDQEAFERDFCQLKPYYTDARGRIPQSTQEYPILGLNLLRLLVQNRIAEFHTELELLSSTALENPCIKHAVELEQSFMEGAYNRVLSARQTVPHETYVHFMDLLAKTVRDEIAGCSEKAYDTLSVNDARQLLLFSSDKDLLEYIKEEHPEWEIKDGCVVFQKSKDSATCKEIPSLLLINQTLSYARELERIV
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2022-08-04
Deposition Author(s): Grishkovskaya, I. , Haselbach, D. , Kandolf, S. , Meinhart, A.