8AAG
H1-bound palindromic nucleosome, state 1
PDB DOI: 10.2210/pdb8aag/pdb
Classification: GENE REGULATION Organism(s): Salmonella Enterica , Fremyella Diplosiphon , Mucilaginibacter Paludis Dsm 18603
Deposited: 2022-07-01 Deposition Author(s): Alegrio Louro, J. , Angelov, D. , Bednar, J. , Beinsteiner, B. , Boopathi, R. , Cheng, T.C. , Dimitrov, S. , Hamiche, A. , Kale, S. , Klaholz, B. , Patel, A.K.M.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 10.0 Å
H1-bound palindromic nucleosome, state 1
Alegrio Louro, J. , Angelov, D. , Bednar, J. , Beinsteiner, B. , Boopathi, R. , Cheng, T.C. , Dimitrov, S. , Hamiche, A. , Kale, S. , Klaholz, B. , Patel, A.K.M.
Primary Citation of Related Structures: 8AAG
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| DNA/RNA (185-MER) | i | 198 | NA | AACTACGTAATATTGGCCAGCTAGGATATCACAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACCGCTTAAACGCACGTACGGAATCCGTACGTGCGTTTAAGCGGTGCTAGAGCTGTCTACGACCAATTGAGCGGCCTCGGCACCGGGATTGTGATATCCTAGCTGGCCAATATTACGTAGT |
| DNA/RNA (185-MER) | j | 197 | NA | ACTACGTAATATTGGCCAGCTAGGATATCACAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACCGCTTAAACGCACGTACGGATTCCGTACGTGCGTTTAAGCGGTGCTAGAGCTGTCTACGACCAATTGAGCGGCCTCGGCACCGGGATTGTGATATCCTAGCTGGCCAATATTACGTAGT |
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Histone H1.0-B | Z | 196 | Salmonella Enterica , Fremyella Diplosiphon , Mucilaginibacter Paludis Dsm 18603 | MAENSAATPAAKPKRSKALKKSTDHPKYSDMILAAVQAEKSRSGSSRQSIQKYIKNHYKVGENADSQIKLSIKRLVTSGALKQTKGVGASGSFRLAKADEGKKPAKKPKKEIKKAVSPKKVAKPKKAAKSPAKAKKPKVAEKKVKKVAKKKPAPSPKKAKKTKTVKAKPVRASKVKKAKPSKPKAKASPKKSGRKK |
| Histone H3.2 | A | 136 | Salmonella Enterica , Fremyella Diplosiphon , Mucilaginibacter Paludis Dsm 18603 | MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA |
| Histone H3.2 | E | 136 | Salmonella Enterica , Fremyella Diplosiphon , Mucilaginibacter Paludis Dsm 18603 | MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA |
| Histone H4 | B | 103 | Salmonella Enterica , Fremyella Diplosiphon , Mucilaginibacter Paludis Dsm 18603 | MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG |
| Histone H4 | F | 103 | Salmonella Enterica , Fremyella Diplosiphon , Mucilaginibacter Paludis Dsm 18603 | MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG |
| Histone H2A type 1 | C | 129 | Salmonella Enterica , Fremyella Diplosiphon , Mucilaginibacter Paludis Dsm 18603 | SGRGKQGGKTRAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGRVTIAQGGVLPNIQSVLLPKKTESSKSAKSK |
| Histone H2A type 1 | G | 129 | Salmonella Enterica , Fremyella Diplosiphon , Mucilaginibacter Paludis Dsm 18603 | SGRGKQGGKTRAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGRVTIAQGGVLPNIQSVLLPKKTESSKSAKSK |
| Histone H2B type 1-C/E/F/G/I | D | 122 | Salmonella Enterica , Fremyella Diplosiphon , Mucilaginibacter Paludis Dsm 18603 | AKSAPAPKKGSKKAVTKTQKKDGKKRRKTRKESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSAK |
| Histone H2B type 1-C/E/F/G/I | H | 122 | Salmonella Enterica , Fremyella Diplosiphon , Mucilaginibacter Paludis Dsm 18603 | AKSAPAPKKGSKKAVTKTQKKDGKKRRKTRKESYAIYVYKVLKQVHPDTGISSKAMSIMNSFVNDVFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSAK |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2022-07-01 Deposition Author(s): Alegrio Louro, J. , Angelov, D. , Bednar, J. , Beinsteiner, B. , Boopathi, R. , Cheng, T.C. , Dimitrov, S. , Hamiche, A. , Kale, S. , Klaholz, B. , Patel, A.K.M.