7ZXU
Sars-cov-2 omicron ba.4/5 rbd in complex with beta-27 fab and c1 nanobody
PDB DOI: 10.2210/pdb7zxu/pdb
Classification: VIRAL PROTEIN Organism(s): Salmonella Enterica , Klebsiella Phage Phiko2 , Gammaretrovirus
Deposited: 2022-05-23 Deposition Author(s): Huo, J. , Ren, J. , Stuart, D.I. , Zhou, D.
Experimental Data Snapshot
Method: X-RAY DIFFRACTION Resolution: 1.89 Å
Sars-cov-2 omicron ba.4/5 rbd in complex with beta-27 fab and c1 nanobody
Huo, J. , Ren, J. , Stuart, D.I. , Zhou, D.
Primary Citation of Related Structures: 7ZXU
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Spike protein S1 | E | 202 | Salmonella Enterica , Klebsiella Phage Phiko2 , Gammaretrovirus | HHHHHHTNLCPFDEVFNATRFASVYAWNRKRISNCVADYSVLYNFAPFFAFKCYGVSPTKLNDLCFTNVYADSFVIRGNEVSQIAPGQTGNIADYNYKLPDDFTGCVIAWNSNKLDSKVGGNYNYRYRLFRKSNLKPFERDISTEIYQAGNKPCNGVAGVNCYFPLQSYGFRPTYGVGHQPYRVVVLSFELLHAPATVCGKK |
| Nanobody C1 | A | 131 | Salmonella Enterica , Klebsiella Phage Phiko2 , Gammaretrovirus | QVQLVESGGGLVQPGGSLRLSCAASGFTNDFYSIAWFRQAPGKEREGVSWLSVSDNTPTYVDSVKDRFTISRHNANNTVYLQMNMLKPEDTAIYYCAAGRFAGRDTWPSSYDYWGQGTQVTVSSKHHHHHH |
| Beta-27 heavy chain | H | 222 | Salmonella Enterica , Klebsiella Phage Phiko2 , Gammaretrovirus | EVQLLESGGGLVQPGGSLRLSCAASGLTVRSNYMNWVRQAPGKGLEWVSLIYSGGSTFYADSVKGRFTISRHDSKNTLYLQMNSLRAEDTAVYYCARDLVVYGMDVWGQGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDK |
| Beta-27 light chain | L | 214 | Salmonella Enterica , Klebsiella Phage Phiko2 , Gammaretrovirus | DIQMTQSPGTLSLSPGERATLSCRASQSVSSSSLAWYQQKHGQAPRLLIYGTSSRATGIPDRFSGSGSGTDFTLTISGLEPEDFAVYYCQQYGSSPLFGGGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC |
Experimental Data
Method: X-RAY DIFFRACTION
Deposited Date: 2022-05-23 Deposition Author(s): Huo, J. , Ren, J. , Stuart, D.I. , Zhou, D.