7ZLJ
Cryo-em structure of c-mannosyltransferase cedpy19, in ternary complex with dol25-p-c-man and acceptor peptide, bound to cmt2-fab and anti-fab nanobody
PDB DOI: 10.2210/pdb7zlj/pdb
Classification: MEMBRANE PROTEIN Organism(s): Caenorhabditis Elegans , Synthetic Construct
Deposited: 2022-04-15 Deposition Author(s): Bloch, J.S. , Boilevin, J. , Darbre, T. , Goddard-Borger, E.D. , Irobalieva, R. , Kossiakoff, A.A. , Locher, K.P. , Mao, R. , Mukherjee, S. , Reymond, J.L.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 3.63 Å
Cryo-em structure of c-mannosyltransferase cedpy19, in ternary complex with dol25-p-c-man and acceptor peptide, bound to cmt2-fab and anti-fab nanobody
Bloch, J.S. , Boilevin, J. , Darbre, T. , Goddard-Borger, E.D. , Irobalieva, R. , Kossiakoff, A.A. , Locher, K.P. , Mao, R. , Mukherjee, S. , Reymond, J.L.
Primary Citation of Related Structures: 7ZLJ
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| CMT2-Fab heavy chain | H | 236 | Caenorhabditis Elegans , Synthetic Construct | EISEVQLVESGGGLVQPGGSLRLSCAASGFNISSSSIHWVRQAPGKGLEWVASISSSYGYTSYADSVKGRFTISADTSKNTAYLQMNSLRAEDTAVYYCARSSSVYWSWWGYSAFDYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHT |
| Anti-Fab nanobody | K | 123 | Caenorhabditis Elegans , Synthetic Construct | GSQVQLQESGGGLVQPGGSLRLSCAASGRTISRYAMSWFRQAPGKEREFVAVARRSGDGAFYADSVQGRFTVSRDDAKNTVYLQMNSLKPEDTAVYYCAIDSDTFYSGSYDYWGQGTQVTVSS |
| CMT2-Fab light chain | L | 215 | Caenorhabditis Elegans , Synthetic Construct | SDIQMTQSPSSLSASVGDRVTITCRASQSVSSAVAWYQQKPGKAPKLLIYSASSLYSGVPSRFSGSRSGTDFTLTISSLQPEDFATYYCQQGASEPITFGQGTKVEIKRTVAAPSVFIFPPSDSQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC |
| C-mannosyltransferase dpy-19 | A | 707 | Caenorhabditis Elegans , Synthetic Construct | MAKKPKNSPEKSKYSSDTSSSLYSQTWLASVVIIGLLVGYINYQHVYTLFENDKHFSHLADFEREMAYRTEMGLYYSYYKTIINAPSFLEGVQEITHDTVTEHGHEINTLNRFNLYPEVILAFLYRPFRAFAKSANWQIELCWQVNRGELRPVESCEGIGNPHYFYITGVFIVAGTVASSIFYLGVLVSDSIFGGFLSVLCFAFNHGEATRVQWTPPLRESFAFPFIIGHIAILTFVIKYKKSGHSMILLLTSMAVPALLFWQFTQFAFFTQICSIFLAFSLDLIPFSTAKTVIHSHIISFLIGFLLLFGNEMMITALYFPSILALGMIIYISPLLSNLKFRPAYVLFLAIIFASITLGLKIGLSKGLGIEDDAHIFDILRSKFTSFANFHTRLYTCSAEFDFIQYSTIEKLCGTLLIPLALISLVTFVFNFVKNTNLLWRNSEEIGENGEILYNVVQLCCSTVMAFLIMRLKLFMTPHLCIVAALFANSKLLGGDRISKTIRVSALVGVIAILFYRGIPNIRQQLNVKGEYSNPDQEMLFDWIQHNTKQDAVFAGTMPVMANVKLTTLRPIVNHPHYEHVGIRERTLKVYSMFSKKPIAEVHKIMKEMGVNYFVFQLMNCSNDERRPECVYRGMWDEEDPKNSGRTALCDLWILAANSKDNSRIAPFKIVYNANRNYIVLKILEDYKDHDGDYKDHDIDYKDDDDK |
| synthetic octapeptide WEHI 1886493 | P | 7 | Caenorhabditis Elegans , Synthetic Construct | GSWAKWS |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2022-04-15 Deposition Author(s): Bloch, J.S. , Boilevin, J. , Darbre, T. , Goddard-Borger, E.D. , Irobalieva, R. , Kossiakoff, A.A. , Locher, K.P. , Mao, R. , Mukherjee, S. , Reymond, J.L.