7ZDM
Complex i from ovis aries at ph5.5, closed state
PDB DOI: 10.2210/pdb7zdm/pdb
Classification: PROTON TRANSPORT Organism(s): Anoxybacillus Flavithermus (Strain Dsm 21510 / Wk1)
Deposited: 2022-03-29 Deposition Author(s): Petrova, O. , Sazanov, L.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 3.44 Å
Complex i from ovis aries at ph5.5, closed state
Primary Citation of Related Structures: 7ZDM
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial | 1 | 464 | Anoxybacillus Flavithermus (Strain Dsm 21510 / Wk1) | MLAARRLLGGSLPARVSVRFSGDTTAPKKTSFGSLKDEDRIFTNLYGRHDWRLKGAQSRGDWYKTKEILLKGPDWILGEVKTSGLRGRGGAGFPTGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIIRHDPHKLVEGCLVGGRAMGARAAYIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDVFVVRGAGAYICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTVANVETVAVSPTICRRGGAWFASFGRERNSGTKLFNISGHVNNPCTVEEEMSVPLKELIEKHAGGVTGGWDNLLAVIPGGSSTPLIPKSVCETVLMDFDALIQAQTGLGTAAVIVMDRSTDIVKAIARLIEFYKHESCGQCTPCREGVDWMNKVMARFVRGDARPAEIDSLWEISKQIEGHTICALGDGAAWPVQGLIRHFRPELEERMQRFAQQHQARQAAS |
| NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial | C | 170 | Anoxybacillus Flavithermus (Strain Dsm 21510 / Wk1) | MSVALRQALWGRRVGTVAAVSVSKVSTRSLSTSTWRLAQDQTRDTQLITVDEKLDITTLTGVPEEHIKTRKARIFVPARNNMQSGVNNTKKWKMEFDTRERWENPLMGWASTADPLSNLVLTFSTKEDAIAFAEKNGWSYDVEERKVPKPKSKSYGANFSWNKRTRVSTK |
| NADH:ubiquinone oxidoreductase subunit A9 | D | 380 | Anoxybacillus Flavithermus (Strain Dsm 21510 / Wk1) | MAAAVHLRVVRVLPMSRSSVPALAASVFHSPPQRQLHHAVIPHGKGGRSSVSGIVATVFGATGFLGRYLVNHLGRMGSQVIVPYRCEPYDTMHLRPMGDLGQIIFMDWNGRDKDSIRRAVEHSNVVINLVGREWETKNFDFEDVFVKIPQAIAQVSKEAGVEKFIHISHLNADIKSSSKYLRNKAVGEKEVRETFPEATIIKPADIFGREDRFLNYFANIRWFGGVPLISLGKKTVKQPVYIVDVTKGIINAIKDPDARGKTFAFVGPNRYLLFDLVQYVFAVAHRPFLPYPMPHFAYRWIGRLFEISPFEPWTTRDKVERIHTTDRTLPHLPGLEDLGVQATPLELKAIEVLRRHRTYRWLSSEIEDVQPAKTVPASGP |
| NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2 | E | 99 | Anoxybacillus Flavithermus (Strain Dsm 21510 / Wk1) | MAAAAAIRGVRGKLGLREIRIHLCQRSPGSQGVRDFIEKRYVELKKANPDLPILIRECSDVQPKLWARYAFGQEKNVSLNNFSADQVTRALENVLSSKA |
| Mitochondrial complex I, B13 subunit | F | 116 | Anoxybacillus Flavithermus (Strain Dsm 21510 / Wk1) | MAGLLKKTTGLVGLAVCETPHERLKILYTKILDVLGHIPKNAAYRKYTEQITNEKLSIVKAEPDVKKLEEQLQGGQIEEVILQAENELSLARKMIQWKPWEPLVEEPPASQWKWPI |
| NADH:ubiquinone oxidoreductase subunit A6 | G | 140 | Anoxybacillus Flavithermus (Strain Dsm 21510 / Wk1) | NGVELGSDFLSKMAASGLRQAAVAASTSVKPIFSRDMNEAKRRVRELYRAWYREVPNTVHLFQLDISVKQGRDKVREMFKKNAHVTDPRVVDLLVIKGKMELEETINVWKQRTHVMRFFHETEAPRPKDFLSKFYVGHDP |
| NADH-ubiquinone oxidoreductase chain 1 | H | 318 | Anoxybacillus Flavithermus (Strain Dsm 21510 / Wk1) | MFMINVLTLIIPILLAVAFLTLVERKVLGYMQFRKGPNVVGPYGLLQPIADAIKLFIKEPLRPATSSISMFILAPILALTLALTMWIPLPMPYPLINMNLGVLFMLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLLMNGSFTLSTLIITQEQVWLIFPAWPLAMMWFISTLAETNRAPFDLTEGESELVSGFNVEYAAGPFALFFMAEYANIIMMNIFTTTLFLGAFHNPYMPELYTINFTIKSLLLSITFLWIRASYPRFRYDQLMHLLWKNFLPLTLALCMWHVSLPILLSSIPPQT |
| NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 | I | 145 | Anoxybacillus Flavithermus (Strain Dsm 21510 / Wk1) | MELLQVLKRGLQQVSGHGGLRGYLRVLFRANDVRVGTLVGEDKYGNKYYEDNKQFFGRHRWVIYTTEMNGKNTFWDVDGSMVPPEWHRWLHCMTDDPPTVKPPTARKFIWTNHKFNLSGTPQQYVPYSTTRKKIQEWVPPSTPYK |
| NADH-ubiquinone oxidoreductase chain 6 | J | 175 | Anoxybacillus Flavithermus (Strain Dsm 21510 / Wk1) | MMTYIVFILSIIFVMGFVGFSSKPSPIYGGLGLIVSGGVGCGIVLNFGGSFLGLMVFLIYLGGMMVVFGYTTAMATEQYPEVWVSNKVVLGTFITGLLMEFLMVYYVLKDKEVEIVFKFNGMGDWVIYDTGDSGFFSEEAMGIAALYSYGTWLVIVTGWSLLIGVVVIMEITRGN |
| NADH dehydrogenase [ubiquinone] 1 subunit C1, mitochondrial | X | 76 | Anoxybacillus Flavithermus (Strain Dsm 21510 / Wk1) | MAPSAFLRPFWKLLAPARFPSVSSSRSKFYIQEPPHGSPNWLKVGLTLGTSAFLWIYLIKQHNEDVLEYKRRNGLE |
| Complex I-9kD | A | 109 | Anoxybacillus Flavithermus (Strain Dsm 21510 / Wk1) | MAASLLLRQGRPGTLKTVLLEAGVFRGLAPAVSLSAESGKNEKGLPPNPKKQSPPKKPASAAPTEPFDNTTYKNLQHHDYSTYTFLDLNLDLSKFRMPQPSSGRESPRH |
| Mitochondrial complex I, 24 kDa subunit | 2 | 246 | Anoxybacillus Flavithermus (Strain Dsm 21510 / Wk1) | MPVLQYEHLEECIRWGKHIRNLHKTAVQNGAGGALFVHRDTPKNNPETPFDFTPENYKRIEAIVKNYPEGHKAAAVLPVLDLAQRQNGWLPISAMNKVAEILQVPPMRVYEVATFYTMYNRKPVGKYHIQVCTTTPCMLRNSDSILEAIQKKLGIKVGETTPDKLFTLIEVECLGACVNAPMVQINDNYYEDLTPKDIEEIIDELKAGKIPKPGPRSGRFSCEPAGGLTSLTEPPKGPGFGVQAGL |
| NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial | K | 355 | Anoxybacillus Flavithermus (Strain Dsm 21510 / Wk1) | MALRFLRLVPASAASRGLAAVPPRVGGIHTSVQRKLQYGPLAYILGEKTTKKMTENSKLITVDGNICSGKSKLAKEVAEKLGLKHFPEAGIHYADSTTGDGKPLPVRFSGNCSLEKFYDDPKSNDGNSYRLQAWLYASRLLQYADALEHLLSTGQGVVLERSIYSDFVFLEAMYRQGFIRKQCVDHYNQVKKVTVCEYLPPHVVIYVDVPVSEVQSRIQKKGNPHEMKITSAYLQDIENVYKGTFLPEMSEKCEVLQYSAWEAEDAEKVVEDIQYLKYDKGPWLDQDDRKLHNLRMLVQDKLEVLNYTSIPVFLPEVTIGAHQSDRVFQEFTELPGRKYRAGYNEDVGDKWIWLK |
| NADH dehydrogenase [ubiquinone] iron-sulfur protein 5 | L | 106 | Anoxybacillus Flavithermus (Strain Dsm 21510 / Wk1) | MPFFDVQKKLGVDLDHWMTIQSAEQPHRIPARCHAFEKEWIECAHGIGSIRAEKECKIEFEDFRECLLRQKTMKRLNAIKRQRDKLIKEGKYTPPPHHSGQEDLRP |
| NADH:ubiquinone oxidoreductase subunit A3 | M | 84 | Anoxybacillus Flavithermus (Strain Dsm 21510 / Wk1) | MAPRVAAFLKNVWAKEPVLVASFAIAGLAVILPTLSPYTKYSLMINRATPYNYPVPLRDDGNMPDVPSHPQDPQGPSLEWLKRL |
| NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3 | N | 98 | Anoxybacillus Flavithermus (Strain Dsm 21510 / Wk1) | MAHGHGHEHGPSKMELPDYKQWKIEGTPLETVQEKLAARGLRDPWGRNEAWRYMGGFANNVSFVGALLKGFKWGFAAFVVAVGAEYYLESQKKDKKHH |
| NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial | V | 186 | Anoxybacillus Flavithermus (Strain Dsm 21510 / Wk1) | MAAARAGVLGIRWLQKAARNVVPLGARTASHITKDMLPGPYPKTPEERAAAAKKYNMRVEDYEPYPDDGMGYGDYPKLPDRSQQERDPWYDWDHPDLRLNWGEPMHWDLDMYIRNRVDTSPTPVNWNLMCKHLFGFVAFMLFMFWVGETYPTYQPVGPKQYPYNNLYLERGGDPNKEPEPVVHYEI |
| Mitochondrial complex I, ESSS subunit | W | 154 | Anoxybacillus Flavithermus (Strain Dsm 21510 / Wk1) | MAAGMLGLCGRRLLAVAATRGLPAASVRWESSSSRAVIAPSTLAGKRPSEPTLRWQEDPEPEDENLYEKNPDSHGYDKDPAVDVWNMRVVFFFGFSIVLVLGSTFVAYLPDYRMQEWARREAERLVKYREAHGLPLMESNCFDPSKIQLPEDED |
| NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 1 | Y | 58 | Anoxybacillus Flavithermus (Strain Dsm 21510 / Wk1) | MMNLLQVVRDHWIHVLVPVGFVFGYYLDRKNDEKLAAFRNKSLLYKRELKPQEEVTWK |
| Complex I-MWFE | Z | 70 | Anoxybacillus Flavithermus (Strain Dsm 21510 / Wk1) | MWFEVLPGIAVMGVCLFIPGMATARIHRFSNGGREKRVAHYSYQWYLMERDRRVSGVNRYYVSKGLENID |
| NADH:ubiquinone oxidoreductase core subunit S1 | 3 | 727 | Anoxybacillus Flavithermus (Strain Dsm 21510 / Wk1) | MLRIPVRKALVGLSKSSKGCVRTTATAASNLIEVFVDGQSVMVEPGTTVLQACEKVGMQIPRFCYHERLSVAGNCRMCLVEIEKAPKVVAACAMPVMKGWNILTNSEKTKKAREGVMEFLLANHPLDCPICDQGGECDLQDQSMMFGSDRSRFLEGKRAVEDKNIGPLVKTIMTRCIQCTRCIRFASEIAGVDDLGTTGRGNDMQVGTYIEKMFMSELSGNIIDICPVGALTSKPYAFTARPWETRKTESIDVMDAVGSNIVVSTRTGEVMRILPRMHEDINEEWISDKTRFAYDGLKRQRLTEPMVRNEKGLLTHTTWEDALSRVAGMLQSCQGNDVAAIAGGLVDAEALIALKDLLNRVDSDTLCTEEVFPTAGAGTDLRSNYLLNTTIAGVEEADVVLLVGTNPRFEAPLFNARIRKSWLHNDLKVALIGSPVDLTYRYDHLGDSPKILQDIASGSHPFSQVLQEAKKPMVVLGSSALQRNDGAAILAAVSNIAQKIRTSSGVTGDWKVMNILHRIASQVAALDLGYKPGVEAIRKNPPKMLFLLGADGGCVTRQDLPKDCFIVYQGHHGDVGAPIADVILPGAAYTEKSATYVNTEGRAQQTKVAVMPPGLAREDWKIIRALSEIAGMTLPYDTLDQVRNRLEEVSPNLVRYDDVEGANYFQQASELSKLVNQQLLADPLVPPQLTIKDFYMTDSISRASQTMAKCVKAVTEGAHAVEEPSIC |
| NADH dehydrogenase [ubiquinone] 1 subunit C2 | O | 122 | Anoxybacillus Flavithermus (Strain Dsm 21510 / Wk1) | VTMMTGRQARAPLQFLPDEARSLPPPKLTDPRLAYIGFLGYCSGLIDNAIRRRPVLSAGLHRQFLYITSFVFVGYYLLKRQDYMYAVRDHDMFSYIKSHPEDFPEKDKKTYREVFEEFHPVR |
| NADH:ubiquinone oxidoreductase subunit B4 | P | 130 | Anoxybacillus Flavithermus (Strain Dsm 21510 / Wk1) | KMSFPKYEPSRLASLPTTLDPAEYDISSETRKAQAERLAIRSRLKREYQLQYNDPSRRGVVEDPALIRWTCARSANVYPNFRPNTKTSLLGALFGIGPLIFWYYVFKTDRDRKEKLIQEGKLDRTFNISY |
| NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 | Q | 144 | Anoxybacillus Flavithermus (Strain Dsm 21510 / Wk1) | MAASKVKQDMPPVGGYGPIDYKRNLPRRGLSGYSMFAVGIGALLFGYWSMMRWNRERRRLQIEDFEARIALMPLLQAEKDRRVLQMLRENLEEEATIMKDVPGWKVGESVFHTTRWVTPMMGELYGLRTGEEILSSTYGFIWYT |
| Mitochondrial complex I, B17 subunit | R | 128 | Anoxybacillus Flavithermus (Strain Dsm 21510 / Wk1) | MSGYTPDEKLRLQQLRELRRRWLKDQELSPREPVLPPRRVSPVERFWNKFLQDGALWKNVIYKTYRHSIFAFTHVLIPVWIIHYYLKYHVTTKPYTIVEKKPRIFPGDTILETGEVIPPMKEFPDQHH |
| NADH:ubiquinone oxidoreductase subunit B7 | S | 137 | Anoxybacillus Flavithermus (Strain Dsm 21510 / Wk1) | MGAHLARRYLGDASVEPEPLRMPTFPPDYGFPERKEREMVATQQEMNDAQLVLQQRDYCAHYLIRFLKCKRDSFPNFLACKHEQHDWDYCEHLDYVKRMKEFERERRLLQRKKRREQREADMAKGLGPGEVAPEVAL |
| NADH:ubiquinone oxidoreductase subunit B9 | T | 179 | Anoxybacillus Flavithermus (Strain Dsm 21510 / Wk1) | MAFLPSAAYLTHQQKVLQLYKRALRHLESRCVHRDKYRYFACLLRARFDEHKNEKDMVKATQLLREAEKEFWHGQHPQPYIFPESPGGTSYERYECYKVPEWCLDDWHPSEKAMYPDYFAKREQWKKLRRESWEREVKQLQEETPVGGPRTEALPPARKQGDLPPLWWHIVTRPRERPM |
| NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2, mitochondrial | U | 108 | Anoxybacillus Flavithermus (Strain Dsm 21510 / Wk1) | MAGMSALKRLAPFAHVGGHLFRGRCARAVGAGGVRRAGGGAHIEPRYRQFPQLTRSQVIQAEFFSATMWFWILWRFWHDSDAVLGHFPYPDPSQWTDEELGIPPDDED |
| Complex I-49kD | 4 | 463 | Anoxybacillus Flavithermus (Strain Dsm 21510 / Wk1) | MAALRALRRLRGAAAQVLRPGAGARLPIQPSRGARQWQPDVEWAEQYGGAVMYPTKETAHWKPPPWNDVDPPKDTLVSNLTLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIQPPPRAQWIRVLFGEITRLLNHIMAVTTHALDIGAMTPFFWMFEEREKMFEFYERVSGARMHAAYVRPGGVHQDLPLGLMDDIYEFSKNFSLRIDELEEMLTNNRIWRNRTVDIGVVTAEDALNYGFSGVMLRGSGIQWDLRKTQPYDVYDQVEFDVPIGSRGDCYDRYLCRVEEMRQSIRIISQCLNKMPPGEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGVYLVSDGSSRPYRCKIKAPGFAHLAGLDKMSKGHMLADVVAIIGTQDIVFGEVDR |
| NADH:ubiquinone oxidoreductase core subunit S3 | 5 | 266 | Anoxybacillus Flavithermus (Strain Dsm 21510 / Wk1) | PVKMAAAAARGCWQRLVGSAAPARVAGRPSVLLLPVRRESASADTRPTVRPRNDVAHKQLSAFGEYVAEILPKYVQQVQVSCFSELEICIHPDGVIPVLTFLRDHSNAQFKSLADLTAVDIPTRQNRFEIVYNLLSLRFNSRIRVKTYTDELTPVESSVSVYKAANWYEREIWDMFGVFFANHPDLRRILTDYGFEGHPFRKDFPLSGYVELRYDDEVKRVVAEPVELAQEFRKFDLNSPWEAFPAYRQPPESLKLEAGDKKPEAK |
| Complex I-20kD | 6 | 223 | Anoxybacillus Flavithermus (Strain Dsm 21510 / Wk1) | MLPLKFPGRGGAAPRLFHPILAVRSGMGAALQVRGVHSSMAADSPSSTQPAVSQARAVVPKPAALPSSRGEYVVAKLDDLINWARRSSLWPMTFGLACCAVEMMHMAAPRYDMDRFGVVFRASPRQSDVMIVAGTLTNKMAPALRKVYDQMPEPRYVVSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYVPGCPPTAEALLYGILQLQKKIKREKRLRIWYRR |
| Complex I-23kD | 9 | 217 | Anoxybacillus Flavithermus (Strain Dsm 21510 / Wk1) | MRKPKMRCLTMPVLLRALAQAQAARAGHASGRGLHSSAVAATYKYVNLREPSMDMKSVTDRAAQTLLWTELIRGLGMTLSYLFREPATINYPFEKGPLSPRFRGEHALRRYPSGEERCIACKLCEAVCPAQAITIEAEPRADGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEFSTETHEELLYNKEKLLNNGDKWEAEIAANIQADYLYR |
| NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial | B | 124 | Anoxybacillus Flavithermus (Strain Dsm 21510 / Wk1) | MAAAVTFLRLLGRGGAVTRGLPGGARCFGVRTSPTGEKVTHTGQVYDDEDYRRVRFVGRQKEVNENFAIDLIAEQPVSQVGSRVISCDGGGGALGHPRVYINLDKETKTGTCGYCGLQFRQQHH |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2022-03-29 Deposition Author(s): Petrova, O. , Sazanov, L.