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FASTA Sequence PDB Format mmCIF Format
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7YQK

Cryo-em structure of gammah2axk15ub-h4k20me2 nucleosome bound to 53bp1

PDB DOI: 10.2210/pdb7yqk/pdb

Classification: NUCLEAR PROTEIN
Organism(s): Homo Sapiens , Synthetic Construct

Deposited: 2022-08-07
Deposition Author(s): Ai, H.S. , Changlin, T. , Fan, Y. , Guochao, C. , Jia-Bin, L. , Liu, L. , Qingyue, G. , Xin, L. , Ze-Bin, T. , Zhiheng, D. , Ziyu, X.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.38 Å

7yqk
Literature

Cryo-em structure of gammah2axk15ub-h4k20me2 nucleosome bound to 53bp1

Ai, H.S. , Changlin, T. , Fan, Y. , Guochao, C. , Jia-Bin, L. , Liu, L. , Qingyue, G. , Xin, L. , Ze-Bin, T. , Zhiheng, D. , Ziyu, X.

Primary Citation of Related Structures: 7YQK


Proteins
Molecule Chains Sequence Length Organism Sequence
Histone H3.1 A 100 Homo Sapiens , Synthetic Construct KKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Histone H3.1 E 100 Homo Sapiens , Synthetic Construct KKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Histone H4 B 83 Homo Sapiens , Synthetic Construct KVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
Histone H4 F 83 Homo Sapiens , Synthetic Construct KVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
Histone H2AX C 112 Homo Sapiens , Synthetic Construct ARAKACTRSSRAGLQFPVGRVHRLLRKGHYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTE
Histone H2AX G 112 Homo Sapiens , Synthetic Construct ARAKACTRSSRAGLQFPVGRVHRLLRKGHYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKTE
Histone H2B D 96 Homo Sapiens , Synthetic Construct RKRSRKESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSA
Histone H2B H 96 Homo Sapiens , Synthetic Construct RKRSRKESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSA
Polyubiquitin-B O 75 Homo Sapiens , Synthetic Construct MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG
UDR motif of 53BP1 K 18 Homo Sapiens , Synthetic Construct KAADISLDNLVEGKRKRR
TP53-binding protein 1 N 118 Homo Sapiens , Synthetic Construct SFVGLRVVAKWSSNGYFYSGKITRDVGAGKYKLLFDDGYECDVLGKDILLCDPIPLDTEVTALSEDEYFSAGVVKGHRKESGELYYSIEKEGQRKWYKRMAVILSLEQGNRLREQYGL

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (145-MER) i 145 NA ATCAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACCGCTTAAACGCACGTACGCGCTGTCCCCCGCGTTTTAACCGCCAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACATCGAT
DNA (145-MER) j 145 NA ATCGATGTATATATCTGACACGTGCCTGGAGACTAGGGAGTAATCCCCTTGGCGGTTAAAACGCGGGGGACAGCGCGTACGTGCGTTTAAGCGGTGCTAGAGCTGTCTACGACCAATTGAGCGGCCTCGGCACCGGGATTCTGAT
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2022-08-07
Deposition Author(s): Ai, H.S. , Changlin, T. , Fan, Y. , Guochao, C. , Jia-Bin, L. , Liu, L. , Qingyue, G. , Xin, L. , Ze-Bin, T. , Zhiheng, D. , Ziyu, X.