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7YMS

Cryo-em structure of coxsackievirus a16 in complex with a neutralizing antibody 9b5

PDB DOI: 10.2210/pdb7yms/pdb

Classification: VIRUS
Organism(s): Coxsackievirus A16

Deposited: 2022-07-29
Deposition Author(s): Cong, Y. , Liu, C.X.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.9 Å

7yms
Literature

Cryo-em structure of coxsackievirus a16 in complex with a neutralizing antibody 9b5

Cong, Y. , Liu, C.X.

Primary Citation of Related Structures: 7YMS


Proteins
Molecule Chains Sequence Length Organism Sequence
Capsid protein VP1 A 297 Coxsackievirus A16 GDPIADMIDQTVNNQVNRSLTALQVLPTAANTEASSHRLGTGVVPALQAAETGASSNASDKNLIETRCVLNHHSTQETAIGNFFSRAGLVSIITMPTMGTQNTDGYANWDIDLMGYAQLRRKCELFTYMRFDAEFTFVVAKPNGELVPQLLQYMYVPPGAPKPTSRDSFAWQTATNPSVFVKMTDPPAQVSVPFMSPASAYQWFYDGYPTFGEHLQANDLDYGQCPNNMMGTFSIRTVGTKKSPHSITLRVYMRIKHVRAWIPRPLRNQPYLFKTNPNYKGNDIKCTSTSRDKITTL
Capsid protein VP2 B 254 Coxsackievirus A16 SPSAEACGYSDRVAQLTIGNSTITTQEAANIVIAYGEWPEYCPDTDATAVDKPTRPDVSVNRFFTLDTKSWAKDSKGWYWKFPDVLTEVGVFGQNAQFHYLYRSGFCVHVQCNASKFHQGALLVAVLPEYVLGTIAGGTGNENSHPPYATTQPGQVGAVLTHPYVLDAGIPLSQLTVCPHQWINLRTNNCATIIVPYMNTVPFDSALNHCNFGLLVIPVVPLDFNAGATSEIPITVTIAPMCAEFAGLRQAVKQ
Capsid protein VP3 C 242 Coxsackievirus A16 GIPTELKPGTNQFLTTDDGVSAPILPGFHPTPPIHIPGEVRNLLEICRVETILEVNNLKTNETTPMQRLCFPVSVQSKTGELCAAFRADPGRDGPWQSTILGQLCRYYTQWSGSLEVTFMFAGSFMATGKMLIAYTPPGGSVPADRITAMLGTHVIWDFGLQSSVTLVVPWISNTHYRAHARAGYFDYYTTGIITIWYQTNYVVPIGAPTTAYIVALAAAQDNFTMKLCKDTEDIEQTANIQ
Capsid protein VP4 D 69 Coxsackievirus A16 MGSQVSTQRSGSHENSNSASEGSTINYTTINYYKDAYAASAGRQDMSQDPKRFTDPVMDVIHEMAPPLK
The heavy chain of fab 9B5 F 218 Coxsackievirus A16 EVQLQQSGPELVKPGASVKMSCKTSGYTFTENTMHWVRQSHGKSLEWIGGIYPKNDDTKYNQKFKGKATLTVDKSSSTACMELRSLTSEDSAVYYCARGDYENYFYAMDYWGQGTSVTVSSAKTTPPSVYPLAPGCGDTTGSSVTLGCLVKGYFPESVTVTWNSGSLSSSVHTFPALLQSGLYTMSSSVTVPSSTWPSQTVTCSVAHPASSTTVDKKL
The light chain of fab 9B5 E 214 Coxsackievirus A16 DIQMTQSPASLSVSVGETVTITCRASENIYSNLAWYQQKQGKSPQLLVYAATNLADGVPSRFSGSGSGTQYSLKINSLQSEDFGTYYCQQFWDTPFTFGSGTKLAIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2022-07-29
Deposition Author(s): Cong, Y. , Liu, C.X.