7YEB
Tr-sfx mmcpdii-dna complex: 3.35 ns snapshot. includes 3.35 ns, dark, and extrapolated structure factors
PDB DOI: 10.2210/pdb7yeb/pdb
Classification: DNA BINDING PROTEIN Organism(s): Methanosarcina Mazei , Synthetic Construct
Deposited: 2022-07-05 Deposition Author(s): Bacellar, C. , Beale, E. , Bessho, Y. , Caramello, N. , Chang, C.-W. , Chang, Y.-K. , Cirelli, C. , Emmerich, H.-J. , Engilberge, S. , Essen, L.-O. , Franz-Badur, S. , Furrer, A. , Gad, W. , Gashi, D. , Glover, H.L. , Hosokawa, Y. , Huang, K.-F. , Huang, W.-C. , Iwata, S. , Joti, Y. , Kiontke, S. , Lee, C.-C. , Liao, J.-H. , Luo, F.J. , Maestre-Reyna, M. , Milne, C. , Nango, E. , Ngura Putu, E.P.G. , Owada, S. , Ozerov, D. , Pang, A.H. , Royant, A. , Saft, M. , Spadaccini, R. , Standfuss, J. , Sugahara, M. , Tanaka, R. , Tanaka, T. , Tono, K. , Tsai, M.-D. , Wang, P.-H. , Weng, J.-H. , Wranik, M. , Wu, H.-Y. , Wu, W.-J. , Yamamoto, J. , Yamashita, A. , Yang, C.-H.
Experimental Data Snapshot
Method: X-RAY DIFFRACTION Resolution: 2.2 Å
Tr-sfx mmcpdii-dna complex: 3.35 ns snapshot. includes 3.35 ns, dark, and extrapolated structure factors
Bacellar, C. , Beale, E. , Bessho, Y. , Caramello, N. , Chang, C.-W. , Chang, Y.-K. , Cirelli, C. , Emmerich, H.-J. , Engilberge, S. , Essen, L.-O. , Franz-Badur, S. , Furrer, A. , Gad, W. , Gashi, D. , Glover, H.L. , Hosokawa, Y. , Huang, K.-F. , Huang, W.-C. , Iwata, S. , Joti, Y. , Kiontke, S. , Lee, C.-C. , Liao, J.-H. , Luo, F.J. , Maestre-Reyna, M. , Milne, C. , Nango, E. , Ngura Putu, E.P.G. , Owada, S. , Ozerov, D. , Pang, A.H. , Royant, A. , Saft, M. , Spadaccini, R. , Standfuss, J. , Sugahara, M. , Tanaka, R. , Tanaka, T. , Tono, K. , Tsai, M.-D. , Wang, P.-H. , Weng, J.-H. , Wranik, M. , Wu, H.-Y. , Wu, W.-J. , Yamamoto, J. , Yamashita, A. , Yang, C.-H.
Primary Citation of Related Structures: 7YEB
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Deoxyribodipyrimidine photolyase | A | 482 | Methanosarcina Mazei , Synthetic Construct | MGSSHHHHHHSSGLVPRGSHMNPKRIRALKSGKQGDGPVVYWMSRDQRAEDNWALLFSRAIAKEANVPVVVVFCLTDEFLEAGIRQYEFMLKGLQELEVSLSRKKIPSFFLRGDPGEKISRFVKDYNAGTLVTDFSPLRIKNQWIEKVISGISIPFFEVDAHNVVPCWEASQKHEYAAHTFRPKLYALLPEFLEEFPELEPNSVTPELSAGAGMVETLSDVLETGVKALLPERALLKNKDPLFEPWHFEPGEKAAKKVMESFIADRLDSYGALRNDPTKNMLSNLSPYLHFGQISSQRVVLEVEKAESNPGSKKAFLDEILIWKEISDNFCYYNPGYDGFESFPSWAKESLNAHRNDVRSHIYTLEEFEAGKTHDPLWNASQMELLSTGKMHGYTRMYWAKKILEWSESPEKALEIAICLNDRYELDGRDPNGYAGIAWSIGGVHDRAWGEREVTGKIRYMSYEGCKRKFDVKLYIEKYSAL |
| Deoxyribodipyrimidine photolyase | B | 482 | Methanosarcina Mazei , Synthetic Construct | MGSSHHHHHHSSGLVPRGSHMNPKRIRALKSGKQGDGPVVYWMSRDQRAEDNWALLFSRAIAKEANVPVVVVFCLTDEFLEAGIRQYEFMLKGLQELEVSLSRKKIPSFFLRGDPGEKISRFVKDYNAGTLVTDFSPLRIKNQWIEKVISGISIPFFEVDAHNVVPCWEASQKHEYAAHTFRPKLYALLPEFLEEFPELEPNSVTPELSAGAGMVETLSDVLETGVKALLPERALLKNKDPLFEPWHFEPGEKAAKKVMESFIADRLDSYGALRNDPTKNMLSNLSPYLHFGQISSQRVVLEVEKAESNPGSKKAFLDEILIWKEISDNFCYYNPGYDGFESFPSWAKESLNAHRNDVRSHIYTLEEFEAGKTHDPLWNASQMELLSTGKMHGYTRMYWAKKILEWSESPEKALEIAICLNDRYELDGRDPNGYAGIAWSIGGVHDRAWGEREVTGKIRYMSYEGCKRKFDVKLYIEKYSAL |
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| CPD photolesion containing DNA | c | 14 | NA | ATCGGCTCGCGCAA |
| complementary oligonucleotide to the CPD containing DNA | d | 14 | NA | TGCGCGAAGCCGAT |
| complementary oligonucleotide to the CPD containing DNA | f | 14 | NA | TGCGCGAAGCCGAT |
| CPD photolesion containing DNA after repair | e | 15 | NA | ATCGGCTTCGCGCAA |
Experimental Data
Method: X-RAY DIFFRACTION
Deposited Date: 2022-07-05 Deposition Author(s): Bacellar, C. , Beale, E. , Bessho, Y. , Caramello, N. , Chang, C.-W. , Chang, Y.-K. , Cirelli, C. , Emmerich, H.-J. , Engilberge, S. , Essen, L.-O. , Franz-Badur, S. , Furrer, A. , Gad, W. , Gashi, D. , Glover, H.L. , Hosokawa, Y. , Huang, K.-F. , Huang, W.-C. , Iwata, S. , Joti, Y. , Kiontke, S. , Lee, C.-C. , Liao, J.-H. , Luo, F.J. , Maestre-Reyna, M. , Milne, C. , Nango, E. , Ngura Putu, E.P.G. , Owada, S. , Ozerov, D. , Pang, A.H. , Royant, A. , Saft, M. , Spadaccini, R. , Standfuss, J. , Sugahara, M. , Tanaka, R. , Tanaka, T. , Tono, K. , Tsai, M.-D. , Wang, P.-H. , Weng, J.-H. , Wranik, M. , Wu, H.-Y. , Wu, W.-J. , Yamamoto, J. , Yamashita, A. , Yang, C.-H.