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FASTA Sequence PDB Format mmCIF Format
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7YDI

Sars-cov-2 spike (6p) in complex with 3 r1-32 fabs and 3 ace2, focused refinement of rbd region

PDB DOI: 10.2210/pdb7ydi/pdb

Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Organism(s): Salmonella Enterica , Gammaretrovirus

Deposited: 2022-07-04
Deposition Author(s): Chen, L. , Chen, X. , Gao, X. , He, J. , Li, Z. , Liu, B. , Xiong, X.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.98 Å

Literature

Sars-cov-2 spike (6p) in complex with 3 r1-32 fabs and 3 ace2, focused refinement of rbd region

Chen, L. , Chen, X. , Gao, X. , He, J. , Li, Z. , Liu, B. , Xiong, X.

Primary Citation of Related Structures: 7YDI


Proteins
Molecule Chains Sequence Length Organism Sequence
Processed angiotensin-converting enzyme 2 A 602 Salmonella Enterica , Gammaretrovirus STIEEQAKTFLDKFNHEAEDLFYQSSLASWNYNTNITEENVQNMNNAGDKWSAFLKEQSTLAQMYPLQEIQNLTVKLQLQALQQNGSSVLSEDKSKRLNTILNTMSTIYSTGKVCNPDNPQECLLLEPGLNEIMANSLDYNERLWAWESWRSEVGKQLRPLYEEYVVLKNEMARANHYEDYGDYWRGDYEVNGVDGYDYSRGQLIEDVEHTFEEIKPLYEHLHAYVRAKLMNAYPSYISPIGCLPAHLLGDMWGRFWTNLYSLTVPFGQKPNIDVTDAMVDQAWDAQRIFKEAEKFFVSVGLPNMTQGFWENSMLTDPGNVQKAVCHPTAWDLGKGDFRILMCTKVTMDDFLTAHHEMGHIQYDMAYAAQPFLLRNGANEGFHEAVGEIMSLSAATPKHLKSIGLLSPDFQEDNETEINFLLKQALTIVGTLPFTYMLEKWRWMVFKGEIPKDQWMKKWWEMKREIVGVVEPVPHDETYCDPASLFHVSNDYSFIRYYTRTLYQFQFQEALCQAAKHEGPLHKCDISNSTEAGQKLFNMLRLGKSEPWTLALENVVGAKNMNVRPLLNYFEPLFTWLKDQNKNSFVGWSTDWSPYADPLVPR
Spike protein S1 E 193 Salmonella Enterica , Gammaretrovirus NLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCG
Heavy chain of R1-32 H 228 Salmonella Enterica , Gammaretrovirus EVQLVESGAEVKKPGSSVKVSCKASGGTFSSYAISWVRQAPGQGLEWMGGIIPILGIANYAQKFQGRVTITADKSTSTAYMELSSLRSEDTAVYYCARENGYSGYGAAANFDLWGRGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCD
Light chain of R1-32 L 214 Salmonella Enterica , Gammaretrovirus QSVLTQPPSVSGAPGQRVTISCTGSSSNIGAGYDVHWYQQLPGTAPKLLIYGNSNRPSGVPDRFSGSKSGTSASLAITGLQAEDEADYYCQSYDSSLSGSVFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPT
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2022-07-04
Deposition Author(s): Chen, L. , Chen, X. , Gao, X. , He, J. , Li, Z. , Liu, B. , Xiong, X.