7YCA
Cryo-em structure of the psi-lhci-lhcp supercomplex from ostreococcus tauri
PDB DOI: 10.2210/pdb7yca/pdb
Classification: PHOTOSYNTHESIS Organism(s): Ostreococcus Tauri
Deposited: 2022-07-01 Deposition Author(s): Ishii, A. , Liu, Z. , Minagawa, J. , Murata, K. , Shan, J. , Sheng, X. , Song, C. , Watanabe, A.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 2.94 Å
Cryo-em structure of the psi-lhci-lhcp supercomplex from ostreococcus tauri
Ishii, A. , Liu, Z. , Minagawa, J. , Murata, K. , Shan, J. , Sheng, X. , Song, C. , Watanabe, A.
Primary Citation of Related Structures: 7YCA
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Lhca1 | 1 | 225 | Ostreococcus Tauri | MFAATRSFTQTVAPKTSVKARARVTARASARPMWFPGAEAPAHLRGDLPCDYGFDPLNLGEKPDNLARYREAELMHARWAMMGVAGAVGVEIAGQGDWASAQPTTWDATAKYLGNETHAPLFAVIGVNGVLVAFAESQRQAATGEARLYPGGSFDPAGLSKGKDFETLKRKELANGRVAMMAFFGIMAQHQADPSGPGPVKQLANHLADPWHVNVCTNPSAIPWL |
| Photosystem I reaction center subunit II, chloroplastic | D | 188 | Ostreococcus Tauri | MSVTHAPARAVAKPTAMRTRKSARSATIVRAEEAKAKTESAAPAVWTAPKLDPNTPSPIFGGSTGGLLRKAQVEEFYVLTWEAKKEAIFEMPTGGAAIMRKGPNLLKLARKEQCLALLNTFRSKMKLDGCIYRVFPSGEVQYLHPKDGVYPEKVNKGRVGANQNMRSIGKNTNPAKIKFQGKLGPFEV |
| Photosystem I reaction centre subunit IV | E | 101 | Ostreococcus Tauri | MFACTKVQANVFAVKTTKTVRRSTVTRAEGEAAKPAAKPQVGPPRGTMVKILRPESYWFNDYGKVISVDQTGVRYPVVVRFEKVNYAGVSTNNYALDEVEY |
| Photosystem I reaction center subunit III | F | 231 | Ostreococcus Tauri | MHAHAQAQLTSKVTVSGLKRSARVQTRAVKTVAHCSAVDFSKKAASLAVAAAVAAAPLVAVEEAFARDVQPYAGLTPCKTSKAFAKREKTELKALEKRLKKYDPESAPALALQATMEKTKTRFANYGESGLLCGKDGLPHLIVDGNLEHLGEFAIPGLGFLYVAGWIGYAGRSYIQENKTASKPTEGEIIIDVPKALGLMFQAGAWPLLAGLELKNGTLTAPESEITVSPR |
| PsaG | G | 132 | Ostreococcus Tauri | MLARTALPTKTTASFNGRVAKQTRTAKRGAKVAARAFDDVNVVMSASNALALYLGRFVFLPYQRAQVERVGMPTQNGQTHFAAGDTRAEEASFITSTNDPAGFNLVDVFAWGSIGHAIGFLALASQSAQQML |
| Photosystem I PsaH, reaction centre subunit VI | H | 166 | Ostreococcus Tauri | MAHVKVHTWTQIARNTTTPPTTTTTTTRERPARQSSMVAHAKTTAFATGAALARSTPTTRRARATVMTRAKYGDESVYFDLSDVEATTGSWDVYGVDSASRYPEQQAAFFEAAAQGLGRREAVYSVLAVSAGLLTVAYGVKGAKDAKLPITVGPQQPAQVGPRDRI |
| Photosystem I reaction center subunit VIII | I | 35 | Ostreococcus Tauri | MAASLLPSIFVPLVGLVFPAVAMASLFLYIEKEQV |
| Photosystem I reaction center subunit IX | J | 42 | Ostreococcus Tauri | MKNFQIYLSTAPVLAAVWFTVLAGILIELNRFFPDALSFPLT |
| Photosystem I PsaG/PsaK protein | K | 131 | Ostreococcus Tauri | MHATVAARPSIVSAKTSLSSTDALKRASAVAQRTKTRDVTVRADWSIGSTENMIVCFNTTAILGAMRFGLMPSVKKNFNGASSHTAMVEQANAKTIGSRDPSGFTAVDVLAGGSLATIISAGEILAGQVPY |
| PSI subunit V | L | 204 | Ostreococcus Tauri | MVLASKLTLDVRSCIGAKSLRTERPRNSAIGSNKTSRRQTKVSASSDKVQIVKPINGDPFIGMLETPVTSSPDVANFLSNLPAYRTGVAPLLRGVEVGLAHGFFVTGPFIKLGPLRSTDAAELAGCLSGAGLVLILTACLSIYGATAFQREEVVGLKTLSGRTIAKDPLQSSEGWASFTSGWLVGGLSGVAWSYVLTQVLPYYS |
| Photosystem I reaction center subunit XII | M | 31 | Ostreococcus Tauri | MPLSDTQVFTALFVALITGILSLRLGTQLYK |
| Chlorophyll a-b binding protein, chloroplastic | 2 | 242 | Ostreococcus Tauri | MWVDRGGDIGAHRRLKARATTTRASRRSVVVSAEAGAERPVWYPGKAPAPHLDGSLPGDFGFDPLSLSADPEMRKWMVQAELQHARWAMLGVAGAVAPELLTKIGVADLPNWVDAGTYQYWAPAGPLFFIQMAMFNWAEVRRWQDMKNPGSMNTDPLFGYNSNDTNTDVGYPGGLFDKLGYAKDPAKAKELKLKEIKNGRLAMVAFLGICAQYVQTGQGPVENLFSHIASPGSVGYFGSQGL |
| Photosystem I PsaN, reaction centre subunit N | N | 139 | Ostreococcus Tauri | MYTVCGANIIAAKAPTAAKKQDKVKRAVSLGLAGLAAATVSVAPAHADLTADLLARTEANKSLNDQKRAATSSANFERSRLVTDGFCQFPQNIFGCQNAAEKGSVKFLSDDMAIECEGTADGKTCSSKAPGAYPSFLGL |
| PsaO | O | 136 | Ostreococcus Tauri | MLALAPINVQRRSPLGVSARGRKTQSKARFAVKVNAANADLKFDDDWKKSNVAVHLASLFGWVIPSASPCPAFPDNASLFKVFSDRISENLAHFPTGPSADDPIWLYMLTWHMGLFACMMFGQIGVQARKQGYFGN |
| Chlorophyll a-b binding protein, chloroplastic | P | 233 | Ostreococcus Tauri | MSALLASSFVSRVAAFKAQKVQNKSVSTTVKADIYPEFGTYPGGGESPIIPFGSEKNAEREVIHGRWAMLGVTGAWAAENGTGIPWFTAGTLCTPDDCTAVADKFPGAVAPLAPEGSGYPSFWNVLIIEIVLVGAAEAYRTGISDSPFDDGLTVGDVNPGGRFDPLGLAESGDLEELKIKELKHCRLSMFAWLGCIFQALATQEGPIANWQSHVADPVHSNVLTNAAKGFGFY |
| Chlorophyll a-b binding protein, chloroplastic | R | 233 | Ostreococcus Tauri | MSALLASSFVSRVAAFKAQKVQNKSVSTTVKADIYPEFGTYPGGGESPIIPFGSEKNAEREVIHGRWAMLGVTGAWAAENGTGIPWFTAGTLCTPDDCTAVADKFPGAVAPLAPEGSGYPSFWNVLIIEIVLVGAAEAYRTGISDSPFDDGLTVGDVNPGGRFDPLGLAESGDLEELKIKELKHCRLSMFAWLGCIFQALATQEGPIANWQSHVADPVHSNVLTNAAKGFGFY |
| Chlorophyll a-b binding protein, chloroplastic | S | 233 | Ostreococcus Tauri | MSALLASSFVSRVAAFKAQKVQNKSVSTTVKADIYPEFGTYPGGGESPIIPFGSEKNAEREVIHGRWAMLGVTGAWAAENGTGIPWFTAGTLCTPDDCTAVADKFPGAVAPLAPEGSGYPSFWNVLIIEIVLVGAAEAYRTGISDSPFDDGLTVGDVNPGGRFDPLGLAESGDLEELKIKELKHCRLSMFAWLGCIFQALATQEGPIANWQSHVADPVHSNVLTNAAKGFGFY |
| Chlorophyll a-b binding protein, chloroplastic | T | 233 | Ostreococcus Tauri | MSALLASSFVSRVAAFKAQKVQNKSVSTTVKADIYPEFGTYPGGGESPIIPFGSEKNAEREVIHGRWAMLGVTGAWAAENGTGIPWFTAGTLCTPDDCTAVADKFPGAVAPLAPEGSGYPSFWNVLIIEIVLVGAAEAYRTGISDSPFDDGLTVGDVNPGGRFDPLGLAESGDLEELKIKELKHCRLSMFAWLGCIFQALATQEGPIANWQSHVADPVHSNVLTNAAKGFGFY |
| Chlorophyll a-b binding protein, chloroplastic | U | 233 | Ostreococcus Tauri | MSALLASSFVSRVAAFKAQKVQNKSVSTTVKADIYPEFGTYPGGGESPIIPFGSEKNAEREVIHGRWAMLGVTGAWAAENGTGIPWFTAGTLCTPDDCTAVADKFPGAVAPLAPEGSGYPSFWNVLIIEIVLVGAAEAYRTGISDSPFDDGLTVGDVNPGGRFDPLGLAESGDLEELKIKELKHCRLSMFAWLGCIFQALATQEGPIANWQSHVADPVHSNVLTNAAKGFGFY |
| Chlorophyll a-b binding protein, chloroplastic | V | 233 | Ostreococcus Tauri | MSALLASSFVSRVAAFKAQKVQNKSVSTTVKADIYPEFGTYPGGGESPIIPFGSEKNAEREVIHGRWAMLGVTGAWAAENGTGIPWFTAGTLCTPDDCTAVADKFPGAVAPLAPEGSGYPSFWNVLIIEIVLVGAAEAYRTGISDSPFDDGLTVGDVNPGGRFDPLGLAESGDLEELKIKELKHCRLSMFAWLGCIFQALATQEGPIANWQSHVADPVHSNVLTNAAKGFGFY |
| Chlorophyll a-b binding protein, chloroplastic | W | 233 | Ostreococcus Tauri | MSALLASSFVSRVAAFKAQKVQNKSVSTTVKADIYPEFGTYPGGGESPIIPFGSEKNAEREVIHGRWAMLGVTGAWAAENGTGIPWFTAGTLCTPDDCTAVADKFPGAVAPLAPEGSGYPSFWNVLIIEIVLVGAAEAYRTGISDSPFDDGLTVGDVNPGGRFDPLGLAESGDLEELKIKELKHCRLSMFAWLGCIFQALATQEGPIANWQSHVADPVHSNVLTNAAKGFGFY |
| Chlorophyll a-b binding protein, chloroplastic | X | 233 | Ostreococcus Tauri | MSALLASSFVSRVAAFKAQKVQNKSVSTTVKADIYPEFGTYPGGGESPIIPFGSEKNAEREVIHGRWAMLGVTGAWAAENGTGIPWFTAGTLCTPDDCTAVADKFPGAVAPLAPEGSGYPSFWNVLIIEIVLVGAAEAYRTGISDSPFDDGLTVGDVNPGGRFDPLGLAESGDLEELKIKELKHCRLSMFAWLGCIFQALATQEGPIANWQSHVADPVHSNVLTNAAKGFGFY |
| Chlorophyll a-b binding protein, chloroplastic | Q | 226 | Ostreococcus Tauri | XRRTKASVPAKRSAFKANKFGSLAPPDLYPEFGTYPGGGESPVIPFGSEKNAEREIIHGRWAMLGVTGAWAAENGTGIPWFTAGTLCTPDDCTAVADKFPGAVAPLAPAGSGYPNFWAVLAIEIFLVGSAECYRTGLFENPFPELTQGDVTPGGRFDPLGFAEAGDLEELKIKELKHSRLAMFAWLGCIMQALATQEGPIANWTAHVADPIHANVLTNAAKGFKFY |
| Chlorophyll a-b binding protein, chloroplastic | 3 | 272 | Ostreococcus Tauri | MFATMNAIKITPFAKRQARRNVSVRAEEAEAAPAPVAKKTRNTEDLAPLYVLGNSEQSLSYLDGSLPGDYGFDPLGLSDPEGAGGFVNPKWLAYSELIHGRWAMLGVAGMVAPEVLGGMGIIPQETGLVWFKAGMIPAQGTYDYWASPFTIFWINAFLMNIAELRRAQDYWNPGSMGKQDFAGLEKMLGGSGDPAYPGGFFNFMKQGEKDMAAMKTKEIKNGRLAMMACFGCGAQACMTGEGPVKNLVDHVIDPFGHNLLVNFSQIGGVSPF |
| Chlorophyll a-b binding protein, chloroplastic | 4 | 236 | Ostreococcus Tauri | MSAQFASTAVVGLRAPKTTKRSQRSVSVRASTQPMWFPGMDAPQHLKGELPGDYGFDPLNLGKEPKDLEWYVQAELQHGRWAMLGVAGAAAPEILTKMGISDLPNWHDAPNYQGYFTDATTLFWVQMLMMNWAEVRRWQDMRKPGSVNEDPAFSGNKLPSGIVGYPGGIFDPLGYAKGDLNKLKAKEIANGRLAMVAFAGIMVQYDHTGVGPVANLVAHMSDPAHNNVFQAKFIGF |
| Chlorophyll a-b binding protein, chloroplastic | 5 | 217 | Ostreococcus Tauri | MIAQRSALSARSIATPKATRRSAVVAAAADRKMWLPAPYKAPAHLDGSIAGDYGFDPLGLGTNPDRLKYYQEAELMNARWAMMAVAGIVGTEVAGIEPRWWEAGTEDYGFPPAALLAIQFPVMGYLENKRIQGWMATGSSGVNETFPFDPMGMGSKDANMKLKEIKNGRAAMIAFVGIVVQAIVYREGPVAALKDHISNPFGCNMATNIMNIPVNLA |
| Lhca6 | 6 | 249 | Ostreococcus Tauri | MFAQTAKTAIALKTTTARSTRASARSTRSVAVRAASDRELWYPGAVAPEYLNGSMAGDYGFDPLRLGANVETLPYLQEAELMNGRWAMAATAGILFTDATGLPKWWEAGAADYGYDFQTLVAFQVVVMGVLEAFRVRGLMKTGESGVLNMFPFDPAGLDAPDKRVKEVKNGRLAMVAFLGMVSSYAVTGLSPLEALEAHMANPQAVNLFTSAVGGESVAFIAFLSCAPTFLLAQKTLGDGKEEFRPIPW |
| Photosystem I P700 chlorophyll a apoprotein A1 | A | 751 | Ostreococcus Tauri | MTISPPEREIKTVKIVVDRDPVPTSFEKWAKPGHFSRTLAKGPATTTWVWDLHADAHDFDSHTTDLEDISRKVFSAHFGQLGVIFIWLSGMYFHGARFSNYEAWLSDPTHIKPSAQVVWPIVGQEILNGDVGGGFQGVQITSGFFQLWRGSGITSELQLYSTAIGALICAGLMFFAGWWHYHKAAPKLEWFQNVESMMNHHLAGLLGLGSLAWAGHQIHIALPVNTLLDAGVDPKEIPLPHEFMLNRALMAELYPSFAKGLTPFFTFNWTEYSDFLTFRGGLNPVTGGLWLTDMAHHHLAIAVLFLVAGHQYRTNWGIGHSMKEILEAHKGPFTGEGHKGLYEILTTSWHAQLAINLALMGSLSIIVSHHMYSMPPYPYLATDYGTQLSLFTHHMWIGGFCICGAAAHAAIFMVRDYDPATNYNNVLDRVLRHRDAIISHLNWVCIFLGFHSFGLYIHNDTMSALGRPQDMFSDTAIQLQPIFAQFVQHTHALAPELTAPTAAGSTSASWGGDIVAVGGKIAMMPISLGTSDFMVHHIHAFTIHVTVLILLKGVLFARSSRLIPDKANLGFRFPCDGPGRGGTCQVSAWDHVFLGLFWMYNSISIVIFHFSWKMQSDVWGSVTGNGVSHITGGNFAQSANTINGWLRDFLWAQSSQVIQSYGSALSAYGLIFLGAHFIWAFSLMFLFSGRGYWQELIESIVWAHNKLKVAPAIQPRALSITQGRAVGVAHYLLGGIATTWSFFLARIIAVG |
| Photosystem I P700 chlorophyll a apoprotein A2 | B | 733 | Ostreococcus Tauri | MATKFPKFSQGLASDPTTRRIWFGIATAHDFETHDGMTEEKLYQKIFASHFGQLAIIFLWTSGNLFHVAWQGNFEKWGEDPLHVRPIAHTIWDPHFGQPAVEAFTRGGASAPVNIAYSGVYQWWYTIGMRTNVDLYNGSLFLLFVAGLFLFAGWLHLQPTFAPAVSWFKNAESRLNHHLSGLFGVSSLAWTGHLVHVAIPASRGETVRWDNFLTTLPHPAGLAPFFTGQWAVYAQNPDTAGHIFGTSEGAGTAILTFLGGFHPQTQSLWLTDMAHHHLAIAVVFIIAGHQYRTNFGIGHSMKEILEAHTAPSGRLGAGHTGLFDTVNNSLHFQLGLALASVGVLCSLTAQHMYSMPPYAFLAQDFTTQAALYSHHQYIAGFIMCGAFAHGAIFFIRDYDPEANKGNVLARMLEHKEAIISHLSWVSLFLGFHTLGLYVHNDVMQAFGTPEKQILIEPVFAQWIQAAQGKALYGFDILLSGDNAATAAGNSIYLPGWLAGINSSTNSLFLPIGPGDFLVHHAIALGLHTTTLILVKGALDARGSKLMPDKKDFGYSFPCDGPGRGGTCDISAWDAFYLAVFWELNTVSWTVFYFHWKHLALWQGNSAQFDESSTYIMGWLRDYLWLNSSQLINGYNPFGMNSLSVWAWMFLFGHLIYATGFMFLISWRGYWQELIETLVWAHERTPLANFVKWNDKPVALSIVQARLVGLTHFAVGFVLTYAAFVIASTSGKFG |
| Photosystem I iron-sulfur center | C | 81 | Ostreococcus Tauri | MSHAVKIYDTCIGCTQCVRACPTDVLEMVPWDGCKAGQIASAPRTEDCVGCKRCEAACPTDFLSVRVYLGSETTRSMGLAY |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2022-07-01 Deposition Author(s): Ishii, A. , Liu, Z. , Minagawa, J. , Murata, K. , Shan, J. , Sheng, X. , Song, C. , Watanabe, A.