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7XRP

Cryo-em structure of sars-cov-2 spike protein in complex with nanobody c5g2 (localized refinement)

PDB DOI: 10.2210/pdb7xrp/pdb

Classification: VIRAL PROTEIN/IMMUNE SYSTEM
Organism(s): Camelus Dromedarius , Severe Acute Respiratory Syndrome Coronavirus 2

Deposited: 2022-05-11
Deposition Author(s): Jiang, Y. , Li, S. , Liu, L. , Liu, X. , Sun, H. , Xia, N. , Zhao, D. , Zheng, Q.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.88 Å

7xrp
Literature

Cryo-em structure of sars-cov-2 spike protein in complex with nanobody c5g2 (localized refinement)

Jiang, Y. , Li, S. , Liu, L. , Liu, X. , Sun, H. , Xia, N. , Zhao, D. , Zheng, Q.

Primary Citation of Related Structures: 7XRP


Proteins
Molecule Chains Sequence Length Organism Sequence
Spike protein S1 A 283 Camelus Dromedarius , Severe Acute Respiratory Syndrome Coronavirus 2 AYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVE
C5G2 nanobody B 125 Camelus Dromedarius , Severe Acute Respiratory Syndrome Coronavirus 2 DVQLVESGGGSVQAGGSLRLSCAASGKFSHLVFLGWFRQAPGKEREGVAAGLGAYESGYYADSVKGRFTVSLDNAENTVYLQMNSLKPEDTALYYCAALVVLSRDNTEFIAHNYWGQGTQVTVSS
Spike protein S1 F 192 Camelus Dromedarius , Severe Acute Respiratory Syndrome Coronavirus 2 PNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAP
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2022-05-11
Deposition Author(s): Jiang, Y. , Li, S. , Liu, L. , Liu, X. , Sun, H. , Xia, N. , Zhao, D. , Zheng, Q.