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7XPL

Crystal structure of a c/d-free rna-guided rna 2'-o-methyltransferase

PDB DOI: 10.2210/pdb7xpl/pdb

Classification: RNA BINDING PROTEIN/RNA
Organism(s): Streptomyces Thermoviolaceus , Sinapis Alba , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.)

Deposited: 2022-05-04
Deposition Author(s): Wang, J. , Ye, K.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.213 Å

7xpl
Literature

Crystal structure of a c/d-free rna-guided rna 2'-o-methyltransferase

Wang, J. , Ye, K.

Primary Citation of Related Structures: 7XPL


Proteins
Molecule Chains Sequence Length Organism Sequence
C/D box methylation guide ribonucleoprotein complex aNOP56 subunit A 388 Streptomyces Thermoviolaceus , Sinapis Alba , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) MVKIYLIEHVIGAVAYDENGNIVDYITNPRDLGKITEELLNNEKGIPFSATVELLKKVNPQEVVVENEAEVPKLQALGYRVSYEPYSKVSRIFRESLPKVAIDIKFASNEEDYYNFLHELSLEYTRRKLRSAAQKRDLLAIQAVRAMDDIDKTINLFSERLREWYSIHFPELDKLIEDHEEYATIVSRFGDRGFLTIDSLKELGFNEQRINRILDAAKKSIGADISEDDLSAMRMIANTILDLYNIRRNLNNYLEGVMKEVAPNVTALVGPALGARLLSIAGSLDELAKMPASTIQVLGAEKALFRALRSGGRPPKHGIIFQYPAIHTSPRWQRGKIARALAAKLAIAARVDAFSGRFIGDQLNEQLKKRIDEIKEKFAQHHHHHHHH
C/D box methylation guide ribonucleoprotein complex aNOP56 subunit B 388 Streptomyces Thermoviolaceus , Sinapis Alba , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) MVKIYLIEHVIGAVAYDENGNIVDYITNPRDLGKITEELLNNEKGIPFSATVELLKKVNPQEVVVENEAEVPKLQALGYRVSYEPYSKVSRIFRESLPKVAIDIKFASNEEDYYNFLHELSLEYTRRKLRSAAQKRDLLAIQAVRAMDDIDKTINLFSERLREWYSIHFPELDKLIEDHEEYATIVSRFGDRGFLTIDSLKELGFNEQRINRILDAAKKSIGADISEDDLSAMRMIANTILDLYNIRRNLNNYLEGVMKEVAPNVTALVGPALGARLLSIAGSLDELAKMPASTIQVLGAEKALFRALRSGGRPPKHGIIFQYPAIHTSPRWQRGKIARALAAKLAIAARVDAFSGRFIGDQLNEQLKKRIDEIKEKFAQHHHHHHHH
Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase E 232 Streptomyces Thermoviolaceus , Sinapis Alba , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) MSEVITVKQTNMENIYECEFNDGSFRLCTRNLVPNFNVYGERLIKYEGVEYREWNAFRSKLAGAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSVVENVDVLYVDIAQPDQTDIAIYNAKFFLKVNGDMLLVIKARSIDVTKDPKEIYKTEVEKLENSNFETIQIINLDPYDKDHAIVLSKYKG
Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase F 232 Streptomyces Thermoviolaceus , Sinapis Alba , Rhodobacter Sphaeroides (Strain Atcc 17023 / Dsm 158 / Jcm 6121 / Nbrc 12203 / Ncimb 8253 / Ath 2.4.1.) MSEVITVKQTNMENIYECEFNDGSFRLCTRNLVPNFNVYGERLIKYEGVEYREWNAFRSKLAGAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSVVENVDVLYVDIAQPDQTDIAIYNAKFFLKVNGDMLLVIKARSIDVTKDPKEIYKTEVEKLENSNFETIQIINLDPYDKDHAIVLSKYKG

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
BMG3 RNA strand A g 29 NA GGGAGUCUGAACACUCAUGGUCUUCGCCC
BMG3 RNA strand B h 29 NA GGGCGAUGGAACACUCAUGGUAGACUCCC
RNA (5'-R(*CP*CP*AP*UP*GP*AP*GP*UP*GP*UP*U)-3') i 11 NA CCAUGAGUGUU
RNA (5'-R(*CP*CP*AP*UP*GP*AP*GP*UP*GP*UP*U)-3') j 11 NA CCAUGAGUGUU
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2022-05-04
Deposition Author(s): Wang, J. , Ye, K.