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7XLT

Cryo-em structure of r-loop monoclonal antibody s9.6 in recognizing rna:dna hybrids

PDB DOI: 10.2210/pdb7xlt/pdb

Classification: DNA-RNA HYBRID
Organism(s): Arabidopsis , Mus Musculus

Deposited: 2022-04-22
Deposition Author(s): Li, H. , Li, Q. , Li, X. , Lin, C. , Luo, Z. , Sun, Q.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 4.4 Å

7xlt
Literature

Cryo-em structure of r-loop monoclonal antibody s9.6 in recognizing rna:dna hybrids

Li, H. , Li, Q. , Li, X. , Lin, C. , Luo, Z. , Sun, Q.

Primary Citation of Related Structures: 7XLT


Proteins
Molecule Chains Sequence Length Organism Sequence
S9.6 Fab HC H 220 Arabidopsis , Mus Musculus EVQLQQSGPELVKPGASVKMSCKASGYTFTSYVMHWVKQKPGQGLEWIGFINLYNDGTKYNEKFKGKATLTSDKSSSTAYMELSSLTSKDSAVYYCARDYYGSRWFDYWGQGTTLTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPSQSITCNVAHPASSTKVDKKIEPRV
S9.6 Fab LC L 219 Arabidopsis , Mus Musculus DVLMTQTPLSLPVSLGDQASISCRSSQSIVHSNGNTYLEWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYYCFQGSHVPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNEC

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA a 40 NA TCTGTTCTTCGTGTTCCTCGTCTGTTCTTCGTGTTCCTCG
RNA b 40 NA CGAGGAACACGAAGAACAGACGAGGAACACGAAGAACAGA
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2022-04-22
Deposition Author(s): Li, H. , Li, Q. , Li, X. , Lin, C. , Luo, Z. , Sun, Q.