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FASTA Sequence PDB Format mmCIF Format
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7XIB

Cryo-em structure of human dnmt1 (aa:351-1616) in complex with ubiquitinated h3 and hemimethylated dna analog (cxxc-disordered form)

PDB DOI: 10.2210/pdb7xib/pdb

Classification: TRANSFERASE/DNA
Organism(s): Homo Sapiens , Synthetic Construct

Deposited: 2022-04-12
Deposition Author(s): Arita, K. , Kikuchi, A. , Kori, S. , Onoda, H. , Yamagata, A. , Yoshimi, S.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.23 Å

7xib
Literature

Cryo-em structure of human dnmt1 (aa:351-1616) in complex with ubiquitinated h3 and hemimethylated dna analog (cxxc-disordered form)

Arita, K. , Kikuchi, A. , Kori, S. , Onoda, H. , Yamagata, A. , Yoshimi, S.

Primary Citation of Related Structures: 7XIB


Proteins
Molecule Chains Sequence Length Organism Sequence
DNA (cytosine-5)-methyltransferase 1 A 1266 Homo Sapiens , Synthetic Construct PKCIQCGQYLDDPDLKYGQHPPDAVDEPQMLTNEKLSIFDANESGFESYEALPQHKLTCFSVYCKHGHLCPIDTGLIEKNIELFFSGSAKPIYDDDPSLEGGVNGKNLGPINEWWITGFDGGEKALIGFSTSFAEYILMDPSPEYAPIFGLMQEKIYISKIVVEFLQSNSDSTYEDLINKIETTVPPSGLNLNRFTEDSLLRHAQFVVEQVESYDEAGDSDEQPIFLTPCMRDLIKLAGVTLGQRRAQARRQTIRHSTREKDRGPTKATTTKLVYQIFDTFFAEQIEKDDREDKENAFKRRRCGVCEVCQQPECGKCKACKDMVKFGGSGRSKQACQERRCPNMAMKEADDDEEVDDNIPEMPSPKKMHQGKKKKQNKNRISWVGEAVKTDGKKSYYKKVCIDAETLEVGDCVSVIPDDSSKPLYLARVTALWEDSSNGQMFHAHWFCAGTDTVLGATSDPLELFLVDECEDMQLSYIHSKVKVIYKAPSENWAMEGGMDPESLLEGDDGKTYFYQLWYDQDYARFESPPKTQPTEDNKFKFCVSCARLAEMRQKEIPRVLEQLEDLDSRVLYYSATKNGILYRVGDGVYLPPEAFTFNIKLSSPVKRPRKEPVDEDLYPEHYRKYSDYIKGSNLDAPEPYRIGRIKEIFCPKKSNGRPNETDIKIRVNKFYRPENTHKSTPASYHADINLLYWSDEEAVVDFKAVQGRCTVEYGEDLPECVQVYSMGGPNRFYFLEAYNAKSKSFEDPPNHARSPGNKGKGKGKGKGKPKSQACEPSEPEIEIKLPKLRTLDVFSGCGGLSEGFHQAGISDTLWAIEMWDPAAQAFRLNNPGSTVFTEDCNILLKLVMAGETTNSRGQRLPQKGDVEMLCGGPPCQGFSGMNRFNSRTYSKFKNSLVVSFLSYCDYYRPRFFLLENVRNFVSFKRSMVLKLTLRCLVRMGYQCTFGVLQAGQYGVAQTRRRAIILAAAPGEKLPLFPEPLHVFAPRACQLSVVVDDKKFVSNITRLSSGPFRTITVRDTMSDLPEVRNGASALEISYNGEPQSWFQRQLRGAQYQPILRDHICKDMSALVAARMRHIPLAPGSDWRDLPNIEVRLSDGTMARKLRYTHHDRKNGRSSSGALRGVCSCVEAGKACDPAARQFNTLIPWCLPHTGNRHNHWAGLYGRLEWDGFFSTTVTNPEPMGKQGRVLHPEQHRVVSVRECARSQGFPDTYRLFGNILDKHRQVGNAVPPPLAKAIGLEIKLCMLAKARESASAKIKEEEAAKD

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (5'-D(*AP*CP*TP*TP*AP*(5CM)P*GP*GP*AP*AP*GP*G)-3') b 12 NA ACTTACGGAAGG
DNA (5'-D(*CP*CP*TP*TP*CP*(C55)P*GP*TP*AP*AP*GP*T)-3') c 12 NA CCTTCCGTAAGT
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2022-04-12
Deposition Author(s): Arita, K. , Kikuchi, A. , Kori, S. , Onoda, H. , Yamagata, A. , Yoshimi, S.