7XDJ
Crystal structure of actinomycin d-echinomycin-d(agcgcgt/acgagct) complex
PDB DOI: 10.2210/pdb7xdj/pdb
Classification: DNA/ANTIBIOTIC Organism(s): Streptomyces , Synthetic Construct
Deposited: 2022-03-27 Deposition Author(s): Chien, C.M. , Hou, M.H. , Satange, R.B.
Experimental Data Snapshot
Method: X-RAY DIFFRACTION Resolution: 2.435 Å
Crystal structure of actinomycin d-echinomycin-d(agcgcgt/acgagct) complex
Chien, C.M. , Hou, M.H. , Satange, R.B.
Primary Citation of Related Structures: 7XDJ
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| DNA (5'-D(P*AP*GP*CP*GP*CP*GP*T)-3') | a | 7 | NA | AGCGCGT |
| DNA (5'-D(P*AP*GP*CP*GP*CP*GP*T)-3') | e | 7 | NA | AGCGCGT |
| DNA (5'-D(P*AP*GP*CP*GP*CP*GP*T)-3') | i | 7 | NA | AGCGCGT |
| DNA (5'-D(P*AP*GP*CP*GP*CP*GP*T)-3') | m | 7 | NA | AGCGCGT |
| DNA (5'-D(P*AP*CP*GP*AP*GP*CP*(BRU))-3') | b | 7 | NA | ACGAGCU |
| DNA (5'-D(P*AP*CP*GP*AP*GP*CP*(BRU))-3') | f | 7 | NA | ACGAGCU |
| DNA (5'-D(P*AP*CP*GP*AP*GP*CP*(BRU))-3') | j | 7 | NA | ACGAGCU |
| DNA (5'-D(P*AP*CP*GP*AP*GP*CP*(BRU))-3') | n | 7 | NA | ACGAGCU |
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| DSN-ALA-N2C-MVA-DSN-ALA-NCY-MVA | L | 8 | Streptomyces , Synthetic Construct | SAXVSAXV |
| DSN-ALA-N2C-MVA-DSN-ALA-NCY-MVA | P | 8 | Streptomyces , Synthetic Construct | SAXVSAXV |
| DSN-ALA-N2C-MVA-DSN-ALA-NCY-MVA | D | 8 | Streptomyces , Synthetic Construct | SAXVSAXV |
| DSN-ALA-N2C-MVA-DSN-ALA-NCY-MVA | H | 8 | Streptomyces , Synthetic Construct | SAXVSAXV |
| THR-DVA-PRO-SAR-MVA-PXZ-THR-DVA-PRO-SAR-MVA | C | 11 | Streptomyces , Synthetic Construct | TVPGVXTVPGV |
| THR-DVA-PRO-SAR-MVA-PXZ-THR-DVA-PRO-SAR-MVA | G | 11 | Streptomyces , Synthetic Construct | TVPGVXTVPGV |
| THR-DVA-PRO-SAR-MVA-PXZ-THR-DVA-PRO-SAR-MVA | K | 11 | Streptomyces , Synthetic Construct | TVPGVXTVPGV |
| THR-DVA-PRO-SAR-MVA-PXZ-THR-DVA-PRO-SAR-MVA | O | 11 | Streptomyces , Synthetic Construct | TVPGVXTVPGV |
Experimental Data
Method: X-RAY DIFFRACTION
Deposited Date: 2022-03-27 Deposition Author(s): Chien, C.M. , Hou, M.H. , Satange, R.B.