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7XDJ

Crystal structure of actinomycin d-echinomycin-d(agcgcgt/acgagct) complex

PDB DOI: 10.2210/pdb7xdj/pdb

Classification: DNA/ANTIBIOTIC
Organism(s): Streptomyces , Synthetic Construct

Deposited: 2022-03-27
Deposition Author(s): Chien, C.M. , Hou, M.H. , Satange, R.B.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.435 Å

Literature

Crystal structure of actinomycin d-echinomycin-d(agcgcgt/acgagct) complex

Chien, C.M. , Hou, M.H. , Satange, R.B.

Primary Citation of Related Structures: 7XDJ


Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (5'-D(P*AP*GP*CP*GP*CP*GP*T)-3') a 7 NA AGCGCGT
DNA (5'-D(P*AP*GP*CP*GP*CP*GP*T)-3') e 7 NA AGCGCGT
DNA (5'-D(P*AP*GP*CP*GP*CP*GP*T)-3') i 7 NA AGCGCGT
DNA (5'-D(P*AP*GP*CP*GP*CP*GP*T)-3') m 7 NA AGCGCGT
DNA (5'-D(P*AP*CP*GP*AP*GP*CP*(BRU))-3') b 7 NA ACGAGCU
DNA (5'-D(P*AP*CP*GP*AP*GP*CP*(BRU))-3') f 7 NA ACGAGCU
DNA (5'-D(P*AP*CP*GP*AP*GP*CP*(BRU))-3') j 7 NA ACGAGCU
DNA (5'-D(P*AP*CP*GP*AP*GP*CP*(BRU))-3') n 7 NA ACGAGCU

Proteins
Molecule Chains Sequence Length Organism Sequence
DSN-ALA-N2C-MVA-DSN-ALA-NCY-MVA L 8 Streptomyces , Synthetic Construct SAXVSAXV
DSN-ALA-N2C-MVA-DSN-ALA-NCY-MVA P 8 Streptomyces , Synthetic Construct SAXVSAXV
DSN-ALA-N2C-MVA-DSN-ALA-NCY-MVA D 8 Streptomyces , Synthetic Construct SAXVSAXV
DSN-ALA-N2C-MVA-DSN-ALA-NCY-MVA H 8 Streptomyces , Synthetic Construct SAXVSAXV
THR-DVA-PRO-SAR-MVA-PXZ-THR-DVA-PRO-SAR-MVA C 11 Streptomyces , Synthetic Construct TVPGVXTVPGV
THR-DVA-PRO-SAR-MVA-PXZ-THR-DVA-PRO-SAR-MVA G 11 Streptomyces , Synthetic Construct TVPGVXTVPGV
THR-DVA-PRO-SAR-MVA-PXZ-THR-DVA-PRO-SAR-MVA K 11 Streptomyces , Synthetic Construct TVPGVXTVPGV
THR-DVA-PRO-SAR-MVA-PXZ-THR-DVA-PRO-SAR-MVA O 11 Streptomyces , Synthetic Construct TVPGVXTVPGV
Experimental Data

Method: X-RAY DIFFRACTION

Deposited Date: 2022-03-27
Deposition Author(s): Chien, C.M. , Hou, M.H. , Satange, R.B.