7XD0
Cryo-em structure of h2bk34ub nucleosome
PDB DOI: 10.2210/pdb7xd0/pdb
Classification: NUCLEAR PROTEIN Organism(s): Homo Sapiens , Synthetic Construct
Deposited: 2022-03-26 Deposition Author(s): Ai, H.S. , Liu, A.J. , Liu, L. , Lou, Z.Y.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 3.48 Å
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Histone H4 | F | 83 | Homo Sapiens , Synthetic Construct | KVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG |
| Histone H4 | B | 83 | Homo Sapiens , Synthetic Construct | KVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG |
| Histone H2A | G | 108 | Homo Sapiens , Synthetic Construct | RAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPK |
| Histone H2A | C | 108 | Homo Sapiens , Synthetic Construct | RAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPK |
| Histone H2B type 1-K | H | 92 | Homo Sapiens , Synthetic Construct | RKESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSA |
| Histone H2B type 1-K | D | 92 | Homo Sapiens , Synthetic Construct | RKESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSA |
| Histone domain-containing protein | E | 99 | Homo Sapiens , Synthetic Construct | KPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA |
| Histone domain-containing protein | A | 99 | Homo Sapiens , Synthetic Construct | KPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA |
| Ubiquitin-60S ribosomal protein L40 | L | 76 | Homo Sapiens , Synthetic Construct | MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG |
| Ubiquitin-60S ribosomal protein L40 | K | 76 | Homo Sapiens , Synthetic Construct | MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG |
| Nucleic Acids / Hybrid | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| DNA (146-MER) | i | 146 | NA | TCGAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACCGCTTAAACGCACGTACGCGCTGTCCCCCGCGTTTTAACCGCCAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACATCCGAT |
| DNA (146-MER) | j | 146 | NA | ATCGGATGTATATATCTGACACGTGCCTGGAGACTAGGGAGTAATCCCCTTGGCGGTTAAAACGCGGGGGACAGCGCGTACGTGCGTTTAAGCGGTGCTAGAGCTGTCTACGACCAATTGAGCGGCCTCGGCACCGGGATTCTCGA |
Experimental Data
Method: ELECTRON MICROSCOPY