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7XCT

Cryo-em structure of dot1l and h2bk34ub-h3k79nle nucleosome 2:1 complex

PDB DOI: 10.2210/pdb7xct/pdb

Classification: NUCLEAR PROTEIN
Organism(s): Homo Sapiens , Synthetic Construct

Deposited: 2022-03-25
Deposition Author(s): Ai, H.S. , Liu, A.J. , Liu, L. , Lou, Z.Y.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 2.72 Å

Literature

Cryo-em structure of dot1l and h2bk34ub-h3k79nle nucleosome 2:1 complex

Ai, H.S. , Liu, A.J. , Liu, L. , Lou, Z.Y.

Primary Citation of Related Structures: 7XCT


Proteins
Molecule Chains Sequence Length Organism Sequence
Ubiquitin L 76 Homo Sapiens , Synthetic Construct MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Ubiquitin N 76 Homo Sapiens , Synthetic Construct MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Histone H4 F 89 Homo Sapiens , Synthetic Construct MAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
Histone H4 B 89 Homo Sapiens , Synthetic Construct MAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG
Histone H2A G 108 Homo Sapiens , Synthetic Construct RAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPK
Histone H2A C 108 Homo Sapiens , Synthetic Construct RAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPK
Histone H2B type 1-K H 93 Homo Sapiens , Synthetic Construct SRKESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSA
Histone H2B type 1-K D 93 Homo Sapiens , Synthetic Construct SRKESYSVYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSA
Histone-lysine N-methyltransferase, H3 lysine-79 specific K 328 Homo Sapiens , Synthetic Construct LELRLKSPVGAEPAVYPWPLPVYDKHHDAAHEIIETIRWVCEEIPDLKLAMENYVLIDYDTKSFESMQRLCDKYNRAIDSIHQLWKGTTQPMKLNTRPSTGLLRHILQQVYNHSVTDPEKLNNYEPFSPEVYGETSFDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRERIANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSKPFAPLNFRINSRNLSDIGTIMRVVELSPLKGSVSWTGKPVSYYLHTIDRTILENYFSSLKNP
Histone-lysine N-methyltransferase, H3 lysine-79 specific M 328 Homo Sapiens , Synthetic Construct LELRLKSPVGAEPAVYPWPLPVYDKHHDAAHEIIETIRWVCEEIPDLKLAMENYVLIDYDTKSFESMQRLCDKYNRAIDSIHQLWKGTTQPMKLNTRPSTGLLRHILQQVYNHSVTDPEKLNNYEPFSPEVYGETSFDLVAQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRERIANTSVIFVNNFAFGPEVDHQLKERFANMKEGGRIVSSKPFAPLNFRINSRNLSDIGTIMRVVELSPLKGSVSWTGKPVSYYLHTIDRTILENYFSSLKNP
Histone domain-containing protein E 99 Homo Sapiens , Synthetic Construct KPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFLTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA
Histone domain-containing protein A 99 Homo Sapiens , Synthetic Construct KPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFLTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA

Nucleic Acids / Hybrid
Molecule Chains Sequence Length Organism Sequence
DNA (145-MER) i 145 NA TCGAGAATCCCGGTGCCGAGGCCGCTCAATTGGTCGTAGACAGCTCTAGCACCGCTTAAACGCACGTACGCGCTGTCCCCCGCGTTTTAACCGCCAAGGGGATTACTCCCTAGTCTCCAGGCACGTGTCAGATATATACATCCGA
DNA (145-MER) j 145 NA TCGGATGTATATATCTGACACGTGCCTGGAGACTAGGGAGTAATCCCCTTGGCGGTTAAAACGCGGGGGACAGCGCGTACGTGCGTTTAAGCGGTGCTAGAGCTGTCTACGACCAATTGAGCGGCCTCGGCACCGGGATTCTCGA
Experimental Data

Method: ELECTRON MICROSCOPY

Deposited Date: 2022-03-25
Deposition Author(s): Ai, H.S. , Liu, A.J. , Liu, L. , Lou, Z.Y.