7XCK
Cryo-em structure of sars-cov-2 omicron rbd in complex with s309 fab (local refinement)
PDB DOI: 10.2210/pdb7xck/pdb
Classification: VIRAL PROTEIN Organism(s): Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2
Deposited: 2022-03-24 Deposition Author(s): Gao, G.F. , Liu, S. , Qi, J.X. , Xie, Y.F. , Zhao, Z.N.
Experimental Data Snapshot
Method: ELECTRON MICROSCOPY Resolution: 2.5 Å
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| S309 heavy chain | A | 230 | Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 | QVQLVQSGAEVKKPGASVKVSCKASGYPFTSYGISWVRQAPGQGLEWMGWISTYNGNTNYAQKFQGRVTMTTDTSTTTGYMELRRLRSDDTAVYYCARDYTRGAWFGESLIGGFDNWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSC |
| S309 light chain | B | 214 | Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 | EIVLTQSPGTLSLSPGERATLSCRASQTVSSTSLAWYQQKPGQAPRLLIYGASSRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQHDTSLTFGGGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC |
| Spike protein S1 | M | 269 | Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 | PTESIVRFPNITNLCPFDEVFNATRFASVYAWNRKRISNCVADYSVLYNLAPFFTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGNIADYNYKLPDDFTGCVIAWNSNKLDSKVSGNYNYLYRLFRKSNLKPFERDISTEIYQAGNKPCNGVAGFNCYFPLRSYSFRPTYGVGHQPYRVVVLSFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLKGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPC |
Experimental Data
Method: ELECTRON MICROSCOPY
Deposited Date: 2022-03-24 Deposition Author(s): Gao, G.F. , Liu, S. , Qi, J.X. , Xie, Y.F. , Zhao, Z.N.