7X7O
Sars-cov-2 spike rbd in complex with neutralizing antibody ut28k
PDB DOI: 10.2210/pdb7x7o/pdb
Classification: VIRAL PROTEIN Organism(s): Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2
Deposited: 2022-03-10 Deposition Author(s): Anraku, Y. , Fukuhara, H. , Hashiguchi, T. , Hayakawa, Y. , Igarashi, E. , Inasaki, N. , Isobe, M. , Kawasuji, H. , Kishi, H. , Kita, S. , Kitajima, I. , Kurosawa, N. , Maenaka, K. , Morinaga, Y. , Niimi, H. , Ozawa, T. , Saga, Y. , Saito, S. , Sasaki, J. , Sasaki, S. , Somekawa, M. , Tani, H. , Yamada, H. , Yamamoto, Y.
Experimental Data Snapshot
Method: X-RAY DIFFRACTION Resolution: 3.75 Å
Sars-cov-2 spike rbd in complex with neutralizing antibody ut28k
Anraku, Y. , Fukuhara, H. , Hashiguchi, T. , Hayakawa, Y. , Igarashi, E. , Inasaki, N. , Isobe, M. , Kawasuji, H. , Kishi, H. , Kita, S. , Kitajima, I. , Kurosawa, N. , Maenaka, K. , Morinaga, Y. , Niimi, H. , Ozawa, T. , Saga, Y. , Saito, S. , Sasaki, J. , Sasaki, S. , Somekawa, M. , Tani, H. , Yamada, H. , Yamamoto, Y.
Primary Citation of Related Structures: 7X7O
| Proteins | ||||
|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Sequence |
| Spike protein S1 | A | 215 | Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 | PTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKN |
| Spike protein S1 | B | 215 | Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 | PTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKN |
| Spike protein S1 | C | 215 | Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 | PTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKN |
| Spike protein S1 | D | 215 | Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 | PTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCGPKKSTNLVKN |
| UT28K Fab, heavy chain | E | 257 | Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 | MDWIWRILFLVGAATGAHSQMQLVQSGPEVKKPGTSVKVSCKASGFTFSISAVQWVRQARGQRLEWIGWIVVGSGNTNYAQKFQERVTITRDMSTSTAYMELSSLRFEDTAVYYCAAPYCGGDCSDGFDIWGQGTMVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSGSSGHHHHHHHHHH |
| UT28K Fab, heavy chain | G | 257 | Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 | MDWIWRILFLVGAATGAHSQMQLVQSGPEVKKPGTSVKVSCKASGFTFSISAVQWVRQARGQRLEWIGWIVVGSGNTNYAQKFQERVTITRDMSTSTAYMELSSLRFEDTAVYYCAAPYCGGDCSDGFDIWGQGTMVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSGSSGHHHHHHHHHH |
| UT28K Fab, heavy chain | H | 257 | Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 | MDWIWRILFLVGAATGAHSQMQLVQSGPEVKKPGTSVKVSCKASGFTFSISAVQWVRQARGQRLEWIGWIVVGSGNTNYAQKFQERVTITRDMSTSTAYMELSSLRFEDTAVYYCAAPYCGGDCSDGFDIWGQGTMVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSGSSGHHHHHHHHHH |
| UT28K Fab, heavy chain | J | 257 | Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 | MDWIWRILFLVGAATGAHSQMQLVQSGPEVKKPGTSVKVSCKASGFTFSISAVQWVRQARGQRLEWIGWIVVGSGNTNYAQKFQERVTITRDMSTSTAYMELSSLRFEDTAVYYCAAPYCGGDCSDGFDIWGQGTMVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSGSSGHHHHHHHHHH |
| UT28K Fab, light chain | F | 235 | Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 | METPAQLLFLLLLWLPDTTGEIVLTQSPGTLSLSPGERATLSCRASQSVSSSYLAWYQQKPGQAPRLLIYGASSRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQYGNSPWTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC |
| UT28K Fab, light chain | I | 235 | Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 | METPAQLLFLLLLWLPDTTGEIVLTQSPGTLSLSPGERATLSCRASQSVSSSYLAWYQQKPGQAPRLLIYGASSRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQYGNSPWTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC |
| UT28K Fab, light chain | K | 235 | Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 | METPAQLLFLLLLWLPDTTGEIVLTQSPGTLSLSPGERATLSCRASQSVSSSYLAWYQQKPGQAPRLLIYGASSRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQYGNSPWTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC |
| UT28K Fab, light chain | L | 235 | Homo Sapiens , Severe Acute Respiratory Syndrome Coronavirus 2 | METPAQLLFLLLLWLPDTTGEIVLTQSPGTLSLSPGERATLSCRASQSVSSSYLAWYQQKPGQAPRLLIYGASSRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQYGNSPWTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC |
Experimental Data
Method: X-RAY DIFFRACTION
Deposited Date: 2022-03-10 Deposition Author(s): Anraku, Y. , Fukuhara, H. , Hashiguchi, T. , Hayakawa, Y. , Igarashi, E. , Inasaki, N. , Isobe, M. , Kawasuji, H. , Kishi, H. , Kita, S. , Kitajima, I. , Kurosawa, N. , Maenaka, K. , Morinaga, Y. , Niimi, H. , Ozawa, T. , Saga, Y. , Saito, S. , Sasaki, J. , Sasaki, S. , Somekawa, M. , Tani, H. , Yamada, H. , Yamamoto, Y.